AMCG00012807


Basic Information

Item Value
gene id AMCG00012807
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8571458 ~ 8607377 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012807
atataatatatacttttaaattttATTGAAGATCATATATGCTACTCAAGTACAAGTGACTGGTctctgtatgtttgtatgtagtGCAGGAACTGACCAGCAATGAGCAGTTCACTGGAGCCTCATCTGGCCGATCTGCGCCCCCTGTCTCGAGGGATCATGATGGTCCCAAGACCCCAGTCTGCCATTGAGAGAAATGCATCACGAAACTCCAGGCAAACCTCCATCAGGTCTGAATCAAGCACTTCAGTTAAATCTGTCCCTGACGATAAGCTCTCGGTGGGTGACGTTGAGAAGATCATTCGGCAAAGGACATTGGAGAAGCAGGATGACTTGCGACGAGCTTTTCAAGCATACGACGCAGAAGGCAATATGACCGTGACTGCAGGGGAATTCCATCGTGTCATTGAAACCTTCCTCCTGCCGCTAACACAGTCGCAGTTTGAGGCAGTGTTGAGTAAGATTGCTAGTAATTTAAAGAACATCACAAGGGCTTTCCGTCTCTTTGACTACAATCAGGATGGCCAGATTCAGCAGCATGAACTTAGAAGAGTCCTGGAGAGTTACTGCTTCCCAATGACCAGTAAGGAATTCAGCAAGCTTTGGTCTCACTACAGCCCGAATAACTCTAACACTCTGGCCTACAAGGAGTTTCTGGAGAAGCTTGGCCTCAGTTGTGAAAGATTGAGAAAAGCACTGCCAGAGAGCACTCAGCTAGACGAAATCCAGGTGATCTTCCAGAAAAAAATGCAGTTGAACTACGAGAACATCAGGAGAGCCCTGCTTGCATTTGATGTGACCCAGAGTGGCTTTGTGTCCCTGGAGGACCTGCAATCTGTCCTCAGTAACTTTCTCTTCGCAATGAGTGAGGCCACCTTTCAGGGCCTGATGAATTGCTTCGGGTTTAAAGCAATGGGACGAATTGCTTGGGACCAGTTCCTCACTAAGTTTAGAGGCACTGTGGCTGAGGGCAATGGACAGACTTTGCCTATGAGACCGACTCATAGGGTGAATCCAGTCCTTGGAGTGTATGAGCCACCCAGCACTGGACACATCCTGAAGACACTACAGCACCATGTGCAGGCCGCCTACCCTTCCTTGAAAAAGGCCTTCCTGGTGTTCGATGATAATCGGGACGGGAAGATCACTCGCGCTGAGATGCGTCGGATTGTGGAAAGTCTGACATTCAGGTTGACAGACGAGCAGTTTAAAGAGCTCATGATTTTACTGGATCCTGAGCACACTGGCGTCATTAGCTACCATCACTTTCTGGAGTTGTTTGAAATGAAGGAGACCCTGCTGCAGCGAGTAAAGGAGGCTCTTGGACATCCCCACTCAACAGCAATGGGAACTGTCAGTCGGGAAAAGCTCAGGGAGGTCCTGCACACTTACGGGTTGCCTGTCTCTGACGACCACTTCCACAAACTGTGCCAGCCCTGTATAGACCCTGCATCTGGCGGAGTCGCTTACAGGCAGTTTCTTCAGAACCTGGGGGTTCCCCTGCCGTCTGAAGACTCCGTCGTTTCGGAGGCTGCTGGGAAAAATGAAGGGAGGAAAAGCAGGGGCTCCTCTATAAGgacAAAACAGCCCAAAAAAGAGCAAGTTAATCATCCTAAAAGCAGGGCAGTAGAGGAGATTATTATGAAAAAACTCAACGAGCACCTGGCGCAGCGGGAAATTACCATTCAGGAATGTCTCCAGACTTCCCGCAAAGAGCCTAGCGGAAGAGTTTCGAAAAGAGATTTGAGGAAgGTTCTGAATGACTGCAGAATTATCCTCGATGATAAACAGTTTCAAATGCTCACAGACACGCTGGGTTTTAGGAACGGAGGACTTCCTGACTCCGAATTCTTTGCCAGAGTTGAAGGTCACAGAGCCACCAGCGCAAACACAACCCTTCGGTGCAGCTCAGCTCACGGTGTCAATGGAAAACAGGTCCACTACATCACAGCAGAACAGTGCATCAGCCAGTTAAAAGATAACATGAATGAAAATTTTGAGaATCTCTACGCTGCGTTCCGCCAGATGGACAGGAATCGCGATGGCATCGTCACCATGCGTGACTTCCGAGACCTGTTTGACAGCTTCACGTTCATTATTAAAGAGAAGGAGTACCAGCGCATGATGGGCCTTCTGGGACTGCAGCCTGGATCCACTTTAAACTACCCCGAATTCCTCCTCCTATTTCAGAAGCCTGAGGGACAACCTTGGTTGGATTCAGTACACAGGCCAAATCAGACCCTGCAAGCCAGTCCCGATCTTGTGTGTGAACAGGTGCACAGTTACCTTGTGAAGAAAGTCCAAAGCAGATGGCACGACCTAGCAAAGGCATTTTGTGAGTTTGATCAAGCTGGCCAAGGCTTCCTCTCTCACGCGGAGTTCCTAGAGACGGTGGGCGTGGAGTTTGCTCCCGCTGACAATGGGCCGAGCAAGCGGATAGTGGAGGAGAATTACAGCACCTTACTGGAGCACCAGAGCAAACAGCAACAGAAGCACATGGAGATTGCAGACAAGCAGGCACACCAGACCCACATGCTTCAGACAGCACAGCTTGAGCAGGAGATCAAGGACATCATCCGCGATTACTACCAGGATTTCAGCACAGCCTTTACGAAGCTGGATATGAACAAGGATGGCTATGTAACAGTCCAGGATTTGCACCGAGTTCTCCAGGACCACAGCTATCAGGTGGAGGAAGTCCAGTTTGTACATCTGCTCAACAGGCTGGGAATCAATACAGATGACAGCAAACTGTCTTATTTTGACTTCCTGCGAGCTTTTGATGATGGTAGAGCCTCGAAATACGGCCCCAGAACACAACCCACTGATCCCACTGAGAGCTGCGTGGGACTCAGCCCAGAAAAGgccttgtttaaaataaaacaaacagtgagAGCTTCATATGACACACTTCAGAAGGCCTTTGCTGCTTTTGATAAGAGTGGCAGCGGCGCCGTGCCAACCCTGGAGTTCCGCCAGACTTCAGAGTGGCTAGAGGAGGTTCAGAAGGTCAGCCGGCCGGTCCAGACTCCCACTCGGACTCTCTCTATGAAGGACATCTTGAGCCGCATCCAGGAAGTGGTCTCCACACGCATATATACCATCAGCCAGGAGATCATAGATATGGACTACGCTCATATTAATtttgaaaACCTGTGGAACCAAATGCCAGTCAACGACTTTGGGAACCTGGACTACCAGCAGTTTCTAAAGAGGTTCAGTGGAGAGCCCTGTAAGAAACGGCCAAGCTCCTCTGGGAGAGAAAGCCCCATGAAAACCCCATCTCCTTCCGCTCTAGAGAGAACCCTATCACCCAGTAGACGGCCCAAAACTGCATCCTGCTTGGGCAGCCCATCCAAGaaagtgaagaaaaacatttacaaatccTGGAGGGAGATCCAGAAGAAGTGCAGGGAGCTGGACTCTGAGGGACTCGGAGAAATCAGCGTGTCCAGATTCTTGGcTGTACTGGAGAACTGTGATATCCAGATGACCCAGGGAGAGTTTGAACAACTGGCCCAAAAATACGACATTAAGAACAATGGCAAATTCTCCTACCCTGAGTTCCtgcgtcattttgttctcacgCTGAAGCCACTGGAGGCAAAGCCACTGGAGAGGGCGAGAGTCCACCAGCCCCAGACACCGATGACTCCTGGAACTCCCAGCAGCCAGTTTGTGGACTCCATGCTAAGACTGCAGGGCCAGGTGCTTCAAGCTTGGAGGCCCCTGAGACAGTCCTTCACATCCTGTGACAGGAGCAGGACCGGCTACATCCCCCTGCAGGACTTCAAAAAGGTAATGACACCCCGAGAAATTCACTACAAGGGATCTGTTTGA

Function

GO: NA

KEGG:

id description
K23851 EFCAB6; EF-hand calcium-binding domain-containing protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012807 True 3840 mRNA 0.50 26 8571458 8607377

Neighbor

gene id symbol gene type direction distance location
AMCG00012798 NA coding upstream 127816 8442404 ~ 8443642 (+)
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding upstream 494311 8041802 ~ 8077147 (+)
AMCG00012786 NA coding upstream 537059 8034094 ~ 8034399 (+)
AMCG00012778 NA coding upstream 612483 7936380 ~ 7958975 (+)
AMCG00012777 NA coding upstream 706628 7862259 ~ 7864830 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding downstream 187791 8795168 ~ 8799438 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding downstream 216120 8823497 ~ 8844351 (+)
AMCG00012815 NA coding downstream 246704 8854081 ~ 8872158 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding downstream 431945 9039322 ~ 9043541 (+)
AMCG00012816 NA coding downstream 456940 9064317 ~ 9077901 (+)
G39838 NA non-coding upstream 302237 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 438894 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 662292 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 836190 7714497 ~ 7735268 (+)
G39668 NA non-coding upstream 858215 7708867 ~ 7713243 (+)
G39951 NA non-coding downstream 59377 8666754 ~ 8667464 (+)
G40022 NA non-coding downstream 443710 9051087 ~ 9053819 (+)
G40041 NA non-coding downstream 483937 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 657501 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 686954 9294331 ~ 9294642 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 1567 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 225603 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 735244 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 843630 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 1189899 7344450 ~ 7381559 (+)
AMCG00012818 NA other downstream 476285 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 505083 9112460 ~ 9130211 (+)
G40224 NA other downstream 1829530 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1933351 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3845862 12453239 ~ 12500402 (+)

Expression


Co-expression Network