AMCG00012811 (LOC106584661,LOC105006114,LOC108420373,LOC107716646)


Basic Information

Item Value
gene id AMCG00012811
gene name LOC106584661,LOC105006114,LOC108420373,LOC107716646
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8795168 ~ 8799438 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012811
AGCCTGGATCCCCTCCCGATGAGCGGCCCTGACTTCGGTGTGCATGGAGATGATGCCGAACTGGTGGAAGTGGAGCCTGAAACTAAACAAGaagttttagaaaataaagacgtTGTAGTCCAGCATGTACACATCGATGGCTTGGGCAGGACAAAAGAGGACCTGCTTGGATATGAAATCGCACAGGTCTTCACCGCCAAGAACCTCATTGATGTCATGAAGAAATCCCACGAAGCCCGGGAGAAACTGCTTCGTCTGGGGATTTTCCGACAAGTAGAAGTGGTCATCGACACCTCTGAAGGCGAAGATGCCCTGCCCAACGGATTGGATGTAACATTTGAAGTAACTGAACTAAGAAGACTAACTGGAAGCTACAACACTATGGTTGGCAATAATGAAGGAAGCATGGTACTTGGCCTTAAATTGCCTAATCTGCTTGGCCGTGCGGAGAAACTTACCTTTCAGTTCTCTTATGGCACCAAAGAAACCTCCTACGGCCTCTCCTTCTTCAAGCCTCAGCCTGGACACTTCGACCGCAActTCTCCCTGAACATGTACAAAGTCACTGGTCAGTTTCCTTGGAGCTCCCTGCGAGAGACTGACCGAGGAATCTCTACAGAGATTAATTTCCCCATCTGGAAGACCAACCACACACTGAAGTGGGAGGGAGTATGGAGAGAGCTGGGCTGCTTGGCTCGCACCGCCTCCTTCGCCATCAGAGAGGAGAGCGGCCACTCGCTGAAATCCTCCCTCTCGCATGCAATGGTTATCGACACCCGAAACTCTGCCATCCTGCCCAGAAGAGGTGCCTTGCTGAAGATCAACCAGGAGCTGGCAGGCTACACCGGGGGAGATGCAAGCTTCTTGAAGGAGGATTTTGAGATCCAGTTGAACAGGCGTCTCTTCTGGGATTCAgTCCTGTCTACTTCTCTGTGGGGGGGGCTTCTGGTCCCTATTGGAGACAGGCCCTCCTGCATTGCTGATAGGTTTTATCTGGGTGGCCCCACCAGTGTGCGGGGTTTCAGCATGTACAGCATTGGACCTCAGAGTGAAGgcGACTACCTTGGTGGTGAAGCGTATTGGGCTGGTGGCGTTCACCTGTACACCCCCCTGCCCTTCCGCCCAGGCCGAGGAGGCTTTGGAGACCTCTTCAGGACCCATTTCTTCCTCAACGCTGGCAACCTCTGCAACCTCAACTACGGCGAGGGTCCACGAGCTCACCTGCAGAAGCTAGCCGAGTGTATCCGCTGGTCCTACGGGGCAGGGATAGTGCTGAGGCTGGGCAACATTGCCAGGCTGGAGCTGAATTACTGCATTCCCATGGGAGTGCAGAGCGGAGACAGGCAAGTTTGA

Function

NR:

description
PREDICTED: sorting and assembly machinery component 50 homolog A isoform X1

GO:

id name namespace
GO:0001889 liver development biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K07277 SAM50, TOB55, bamA; outer membrane protein insertion porin family

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012811 True 1353 mRNA 0.53 13 8795168 8799438

Neighbor

gene id symbol gene type direction distance location
AMCG00012807 NA coding upstream 187791 8571458 ~ 8607377 (+)
AMCG00012798 NA coding upstream 351526 8442404 ~ 8443642 (+)
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding upstream 718021 8041802 ~ 8077147 (+)
AMCG00012786 NA coding upstream 760769 8034094 ~ 8034399 (+)
AMCG00012778 NA coding upstream 836193 7936380 ~ 7958975 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding downstream 24059 8823497 ~ 8844351 (+)
AMCG00012815 NA coding downstream 54643 8854081 ~ 8872158 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding downstream 239884 9039322 ~ 9043541 (+)
AMCG00012816 NA coding downstream 264879 9064317 ~ 9077901 (+)
AMCG00012819 NA coding downstream 295974 9095412 ~ 9111776 (+)
G39951 NA non-coding upstream 127704 8666754 ~ 8667464 (+)
G39838 NA non-coding upstream 525947 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 662604 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 886002 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 1059900 7714497 ~ 7735268 (+)
G40022 NA non-coding downstream 251649 9051087 ~ 9053819 (+)
G40041 NA non-coding downstream 291876 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 465440 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 494893 9294331 ~ 9294642 (+)
G40145 NA non-coding downstream 674107 9473545 ~ 9473868 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 225277 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 449313 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 958954 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 1067340 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 1413609 7344450 ~ 7381559 (+)
AMCG00012818 NA other downstream 284224 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 313022 9112460 ~ 9130211 (+)
G40224 NA other downstream 1637469 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1741290 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3653801 12453239 ~ 12500402 (+)

Expression


Co-expression Network