AMCG00012812 (si:dkey-23p11.2,kiaa1033,LOC107678984,LOC107696292)


Basic Information

Item Value
gene id AMCG00012812
gene name si:dkey-23p11.2,kiaa1033,LOC107678984,LOC107696292
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8802882 ~ 8821156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012812
GAAGTAGGAAGTCATGGGGTAAATCACGGGACCAATGAACTTCACTTTCACTCGCCGCCGCTGCAGCAGCTGACAGTGCAGACTGGGATGATGGCGGTGGAAGCGATCTCTCCAGACTGGGAATTTGATCGCTTTGACGATGGGTCTCAAAAAATCCATGCTGAAGTACAGCTGAAGAACTATGGCAAATTCTTAGAAGAATACACTTTGCAGCTCAAGGGGATTGAAGATGCTTTGGATGAGTCCATTGGAGATcttcttcCGTATGAGCAATCCTCTTTGTTGGAATTGATCAAAACAGAGAATAAGGTCCTTAACAAAGTCATTACAGTTTATGCAGCTCTTTGCtgtgaaattaagaaattaaaatatgagGCGGAGACCAAGTTTTACAATGGTTTGCTGTATTATGGTGAAGGAGCTTCAGACACCAGTGTGGTGGAGGGGGAGTCACAGATCCAGATGGGCAGATTCATCTCTTTCTTACAGGAGCTCTCCTGTTTTGTCTCTAGGTGCTCAGAGGTGGTGGTCAACGTAGTTCATCAACTGGCATCCCTCTACAGCAGCAACAAgGGTGCCACAAAAATCATTGAATCTTCTGGAGTTCACTTTCagGTGGTGTATGAGCACCTGGGAGAGCTTTTGGTGGTTCTCCTGACCTTGGATGAGATCATTGGGAACCATGCCACTCTGAAAGAGCACTGGAAAATGTATAAGAGGTTATTGAAATCGGTCCATCACAACCCGTCTAAGTTTGCCATCCAGGAGGAGAAACTCAAACCCTTTGAGAAGCTGCTGCTGAAGCTGGAAGGACAGCTGTTGGATGGGATGATATTTCAGACCTGTGTAGAGCAGAGGTTTGATAATCCAGGAGAAGGAGTGTCAGTCTCCAAGAACAGCACCTTTGCAGAGGAGTTTGCTCACAACATTCGCACAATATTCACCAATGTGGAATCAAAGCTAGGTGAACCTTCTGAAATTGACCAGAGGGACAAATACACAGGAGTCTGTGGGCTGTTCGTACTTCATTTCCACATCTTCAGGACTGTTGACAAGAAACTATATAAATCTCTGCTGGATGTCTGTAAAAAGGTGCCTGCTGTCACTCTGACCTCCAACATCATCTGGTTCTCAGACGCTTTCCTGGTGAACAAGGTCCCCGCTGCCGCCAAGCTCCTGGACAAAAAGAGTCTCCAGAGCATCCGAGCCCAGAGGGACAGCTTCCTGCAGCAAAAAGCGCAGACCCTGGCCAAGGATGTGCAGTCCTACTATGTGTTCGTGACCTCATGGATGATGAAAATGGAGTCCATTTTGTCCAAGGAGCAGAGGCCAGAGAAGTTTGCTGATGACCTGAGCAGCAGGTGTAACATATTTATACAGGGTATTCTTTATGCGTACAGCATCggcaccatcatcaaaaccacCATGAACCTGTACATGTCTATGCAGAAGCCCATGACCAAGACTTCGGTGAAGGCCTTGTGTCGACTGATAGAACTGCTAAAGGCGGTGGAGCACACCTTTCACAGGCGCTCCATGGTCGTGGCCGACTCGGTCTCCCACATCACTCAGCATCTGCAGTTCCAAGCCCTCAACTCCATCGCCACGGCCAAGAAAAGAGTGATTTCAGACAAGAAGTACAGTGAGCAGCGTCTGGATGTGTTGTCAGCCTTGGTGCTGGTAGAGAATGCCCTCAATGGGCCCAGCACCAAAGAGAGGAGGCTGGTCATCTCGCTGGCTCTCAGTGTGGGCACACAGATGAAAACCTTTAAAGATGAAGAGCTGCTTCCTCTGCAGCTGTTCCTGAAGAAGCTGGATCTCATTAGTGAGCTGAGAGAGAGGGTCAAAGTTCAGTGTGACTGCAGCTTCCTGTTCTGGCACCGCGCAGTGTTTCCCATTTACCTGGACGATGTTTATGACAATGCAGTGGATGCTGCTAGAATACATTACATGTTCAGTGCCCTCCGAGACTGTGTGCCCGCCATGCTCCATGCCAAGCACCTGGCCACCTATGACCAGCTGCTGGAGAGTTATGACAAAGAGATCATGGATGTCTTCAATGAGcaCCTGCTGGATAAACTATGTAAGGAGATTGAGAAGGACCTGCGTCTGTCTGTCCACACTCACCTCAAACTGGACGACAGGAATCCCTTCAAGGTGGGGATGAAGGACCTGGCCCACTTCTTCTCCCTCAAGCCCATTCGATTCTTCAACCGTTTCATTGACATAAAAGCATATGTGACTCATTACCTGGACACAACCTTCTACAACCTGACCACGGTGGCCCTGCATGACTGGGCTACTTACAGTGAGATGAGGAACTTGGCTACACAGAGATATGGTCTCATGATGACTGAAGCCCACCTTCCCAGCCAAACCCTAGAGCAGGGTCTGGATGTCCTAGAGATCATGAGAAACATCCATGTCTTTGTGTCTCGCTACCTGTACAACCTTAACAACCAGATCTTCGTTGAAAGGACGAGCAACAACAAGCACTTGAACACTATTAACATCCGTCACATCGCCAACTCCATCCGCACACACGGCACTGGCATAATGAACACCACGGTGAACTTCACTTACCAGTTCCTGCGAAAGAAGTTCTACATCTTCAGCCAGTTTATGTATGACGAGCACATCAAATCCCGGCTGATCAAGGATATCCGCTTCTTCAGAGAGACCAAGGATCAGACGGATCAGAAGtatcCCTTTGACAGAGCGGAGAAGTTTAATCGGGGTATCAGGAAGCTAGGGATCACCCCTGATGGGCAGAGTTACCTGGACCAGTTCAGACAGCTGATCAGCCAGATTGGCAATGCCATGGGATATGTACGCATGATTCGATCTGGCGGTCTGCACTGTTGCAGCAGCGCTATAAGGTTTGTCCCTGATCTCGAAGACATTGTGAACTTTGAAGAGCTGGTGAAGGAAGAGGGGTTATCTGAGGAAACTCAAAAGGCATCCAGGCTGCTGGACTCTGTCCTGGGGGACCTGACCAGCAATTCCGCCGAGGGGACAGAGTACTTCAAGATGCTGGTCGCCGTGTTCGCGCCTGAATTCCGCAGCATCAAAAACATGCACCTGCGTAACTTCTACATGATTGTCCCTCCTCTGACGGTGAACTTTGTTGAGCATTCCATCGGCTGTAAGGAGAAACTGAACAAGAAGAACAAAGTGGGGGCTGCCTTCACAGACGATGGCTTTGCTATGGGTGTGGCCTATATCCTGAAGCTGCTGGATCAGTACCAGGAGTTCGATTCCCTCCACTGGTTCCAGGCTGTCAGGGAGAAGTACATGTTGGAGATGAAGGCCGTGGTCAAAGAGCAGAATGTCCAAGCCACCAACCAGGATGAGAAGCTGATGCAAACCATGAACCTGACCCAGAAGAGGCTGGATATCTACCTACGGGAGTTCGAGCTGCTGTACTTCTCACTCAGCAGTGCCAGGATTTTCTTCCGGGCGGACAAAACGGCGGCAGAGGAGAACCAAGAGAAGAAGTATAAAGACGATGTTTCCAAAACGGGCAACGGCGACTCCTCGAGCAGCTCCTCCACCACCGAGCCGGCGATGAAGTGATGTGGAACCATGGGAGGAGTGGCTCGGCACTATTTCTTCAGGGGATGGAAAACTAAACGCTACAAAGCTGAGAGAGGGCACTCTTGACAAATGCAGCTCTGCCTTGGACCTGGGAGGAGGGTGGGAGCTGTTTTAAGAGTGAGAGTCAAGGGACATTCATGGACAGGTTTTGGTGGCTTGATGTCAAGTCCATTCTGGGCCGACAGCAGTCACTCCTGCACTCCCAGGATCATCCCAGCAGATGGCATTATTGACAAGAAGAGTGCAGGCTTGGATAACATCCTGCACTGGAATTCTCTCCATCTCGGCTCCAGCTGCACATAACTGCAAATCCCCTGCTCTTCACTCCAAACAGTCCGCGATATCTGCTGAGCAAACAGGACTCTGACTTCTGTTCAACTTTTAATAAAACCTAAGCTACGTTTTTGTAGTTTCCCCctccttttttttaaaggtttaacCTGACTGTTAAGATCTGCCAGAGTGGTACCTGAGACTGCAATGGATAGTATTTTGTTAGTATTTTTAagttaggttttttttttacttgactATATGTGATTGATCTATGGATGACATAGGcatttgaattattgttttctaGTAGAGTTTCTACACCTTTTTACAGAGAAGAGGCTCTTATTTTGCCCagtgcaataaaatacagaaggaCTATACAAGGTAACTGCACTCGATACACAAGCATACTTGCCAAGGATATCGACAACTTAAGACCCATATAACTAGCTAccaaaataattcatataagCAATGATTGGCATCTCAAAGAATCAGATTAATAAGTTATTCTTGCACTGACTGGGCTTAAAAGATTATGGCGGAGATGCTAGACTAGGCAGGCATAATTCatggtgggggaaaaaa

Function

NR:

description
WASH complex subunit 4

GO: NA

KEGG:

id description
K18465 MRT43, SWIP; WASH complex subunit 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012812 True 4461 mRNA 0.48 33 8802882 8821156

Neighbor

gene id symbol gene type direction distance location
AMCG00012814 scube1,LOC106609323,LOC106576154,LOC107726032 coding downstream 55322 8738170 ~ 8747560 (-)
AMCG00012813 scube1 coding downstream 121283 8667317 ~ 8681599 (-)
AMCG00012808 mpped1,LOC106959763,LOC103131679,LOC108250209,LOC107103222 coding downstream 152842 8637937 ~ 8650040 (-)
AMCG00012809 NA coding downstream 186781 8612242 ~ 8616101 (-)
AMCG00012805 NA coding downstream 249793 8536168 ~ 8553089 (-)
AMCG00012821 NA coding upstream 25428 8846584 ~ 8849492 (-)
AMCG00012823 chst11,LOC106609345,LOC106576221 coding upstream 85686 8906842 ~ 8907663 (-)
AMCG00012827 NA coding upstream 93907 8915063 ~ 8967612 (-)
AMCG00012825 NA coding upstream 192205 9013361 ~ 9031350 (-)
AMCG00012822 NA coding upstream 230421 9051577 ~ 9062325 (-)
G39952 NA non-coding downstream 135858 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 232993 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 533661 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 974735 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 1131240 7671236 ~ 7671642 (-)
G40008 NA non-coding upstream 78957 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 262504 9083660 ~ 9085793 (-)
G40115 NA non-coding upstream 415744 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 865654 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1404538 10225694 ~ 10225957 (-)
AMCG00012782 NA other downstream 898427 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2106958 6638480 ~ 6695924 (-)
G39487 NA other downstream 2346704 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2739065 6052364 ~ 6063817 (-)
G38490 NA other downstream 6618719 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 291285 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 1919198 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2036725 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3419240 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4075364 12896520 ~ 12906333 (-)

Expression


Co-expression Network