AMCG00012813 (scube1)


Basic Information

Item Value
gene id AMCG00012813
gene name scube1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8667317 ~ 8681599 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012813
ATCGACGAGTGCTCTTTTGAGAGAACTTGTGACCATACATGCATCAACTACCCTGGCAGCTTTGAGTGCATCTGTCAGAAAGGCTTTACGCTGTATGGGCTCACACACTGCGGAGACATCGATGAATGCAGCATCAATAATGGCAGCTGTGAGCATGGCTGTGTCAACACCGTGGGGAGCTACGAGTGCCTATGTCCTCCTGGGAAGAAGCTCCACTGGAACAAGAAGGATTGTCTTGAGGCGGTGAAATGTCTCCCAAATGGAAAGCCAACCCCAAAGGCTCAGCTGATCTGTGCCAAGACTGGTGGTGTGGAGATGTGTTCCTTGTCCTGTCCGTCCAACGCTCTGTTTGTTGCAGATTCTGAAAACAGTTACACTTTAAGTTGTGGTGTTCCAGGACAGTCGGGCAAATCCCCACAGAAGAGAAACACCACGGCCGCCATACTGGGCTGCACAGatacATTAGCTCCACCTATTAAGCAAAAAGCCCGCTTTAAAATTAAGGATGCGAAATGTCACCTCAGGCCTCGCAACAAGGAGAAGTTCAGAGATAATCCGAAGCAGATTGCACAAGATGACTGCCATGTGACGTTTGTGAACCTAAAATGCGACTCGTCAAAGAAGAAGCGCCGAGGTCGAAAATCCCCCTCTAAAGAAGTGTCGCACATCACGGCTGAGTTTGAAGTGGagatgaaggaggaggaggtatCAGAGTCTTGCAATGTGGATTGTGTGCGCAAGAGGATGGAACAGAGGCTACAGACGGTGATCAAGACCCTGAGGAAGTCCATCAACAAGCAGCAATTCTACATCCAGTTTTCGGGAACCGACTATGAAGTTGCCCAGAAGCCGGCCAAGCTGCCAGAGAATCAGGActgcagtgcagggaCCTACTACAGTGGAGAGCAGGACCTGTGTGTCCAGTGTCCCCCGGGAACATACCAAGACACTGCCGGCCAGCTGTCCTGCGAGCCCTGCCCTAGCAATGAGggccaggccatcgctggggCCAGGAACGTTTCTGAGTGTGGAGGTCAGTGCCCCGCTGGTCATTTCTCTGCCGACGGTTTCCAGCCCTGCCAGTCCTGTGTCCTGGGCACCTACCAGCCCGAGCCGGGCCGCGTGCTCTGCTTCTCCTGCGGAGGAGGACTGATGACCAAGTATGAGGCCGCTGTCTCCTTCCAGGACTGTGAAACGAAAGTGCATTGTTCCCCTGGGCACTATTATAACTCCACCACGCACCGGTGTATCCGCTGTCCCGCTGGTACCTACCAGCCCGAGTTTGGTCAGAACTACTGCATAACCTGCCCTGGAAACACAACGACAGATTTTGATGGATCCACCAATGTTACGCATTGTAAAAATCAGGTGTGTGGAGGGGAGCTGGGTGACTACACCGGCTTCATCGAGTCGCCTAACTACCCTGGGGATTACCCCGCCAATGTGGACTGCATCTGGAATAtcaacccccccccaaagaGGCGCATTCTGATCGTGGTGCCCGAGATCTTCCTTCCCATCGAAGACGAGTGTGGAGATGTTCTGGTCATGAGGAAAAGTGCTTTACCTACCTCAATAACAACCTATGAGACGTGTCAGACATATGAGAGACCCATCGCCTTCACTTCAAGGTCCCGCAAGCTATGGATACAGTTTAAATCCAATGAGGGAAACAGTGGAAAGGGATTCCAAGTACCATACGTAACTTATGATGAGGATTACCAGCAGTTAATAGAAGATATTGTTCGTGATGGAAGACTGTATGCGTCTGAGAATCACCaagaaatattaaaaGACAAAAAACTGATCAAAGCACTTTTTGATGTATTGGCTCATCCTCAAAATTACTTCAAGTACACAGTGCAGGAGTCCAAGGAAATGTTTCCGAGGTCCTTCATTAAGCTGCTGCGGTCTAAAGTATCCAGATTTCTACGGCCCTATAAA

Function

symbol description
scube1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell surface receptor signaling pathway; muscle cell development; and primitive hemopoiesis. Located in plasma membrane. Is expressed in several structures, including axial chorda mesoderm; blastomere; central nervous system; optic cup; and solid lens vesicle. Orthologous to human SCUBE1 (signal peptide, CUB domain and EGF like domain containing 1).

NR:

description
PREDICTED: signal peptide, CUB and EGF-like domain-containing protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012813 True 1944 mRNA 0.51 14 8667317 8681599

Neighbor

gene id symbol gene type direction distance location
AMCG00012808 mpped1,LOC106959763,LOC103131679,LOC108250209,LOC107103222 coding downstream 17277 8637937 ~ 8650040 (-)
AMCG00012809 NA coding downstream 51216 8612242 ~ 8616101 (-)
AMCG00012805 NA coding downstream 114228 8536168 ~ 8553089 (-)
AMCG00012806 NA coding downstream 134599 8499637 ~ 8532718 (-)
AMCG00012804 NA coding downstream 188138 8464160 ~ 8479179 (-)
AMCG00012814 scube1,LOC106609323,LOC106576154,LOC107726032 coding upstream 56571 8738170 ~ 8747560 (-)
AMCG00012812 si:dkey-23p11.2,kiaa1033,LOC107678984,LOC107696292 coding upstream 121283 8802882 ~ 8821156 (-)
AMCG00012821 NA coding upstream 164985 8846584 ~ 8849492 (-)
AMCG00012823 chst11,LOC106609345,LOC106576221 coding upstream 225243 8906842 ~ 8907663 (-)
AMCG00012827 NA coding upstream 233464 8915063 ~ 8967612 (-)
G39952 NA non-coding downstream 293 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 97428 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 398096 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 839170 7827278 ~ 7828147 (-)
G39662 NA non-coding downstream 995675 7671236 ~ 7671642 (-)
G40008 NA non-coding upstream 218514 8900113 ~ 8901481 (-)
G40039 NA non-coding upstream 402061 9083660 ~ 9085793 (-)
G40115 NA non-coding upstream 555301 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 1005211 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1544095 10225694 ~ 10225957 (-)
AMCG00012782 NA other downstream 762862 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 1971393 6638480 ~ 6695924 (-)
G39487 NA other downstream 2211139 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2603500 6052364 ~ 6063817 (-)
G38490 NA other downstream 6483154 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 430842 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 2058755 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 2176282 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3558797 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 4214921 12896520 ~ 12906333 (-)

Expression


Co-expression Network