AMCG00012815


Basic Information

Item Value
gene id AMCG00012815
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8854081 ~ 8872158 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012815
ATGACCTTCCACGCAGTTGGAAGTGTCATTGCGAACTCTGCTGGTACTAGTTTAGCGGCACACATGAGCAGCAGAGGGAACTGGACTCTGTCGCTCAAGCCCTTTCAGTCTGAGAAGATTACGTCCCTGCTGCAGACCATGGTGCCAACAGGGTTTGTCAAGCTGCAGGAGGAAAGATTGGCTATGGCGGACCTTGGCAAACAGGAGGGCATTCAAAACGGCTTCAGGTCTGACCTCCCTCACCTGGAGAGCCGGCGGCACTCTGACCGCAGTCAGAGGGCATCGGTGCACTCTGAGAATGGGGACTGTTGTTACTCGGAAACGGAGGCCATGCTACCCGAAGGGAGGCTTtcaggtgaggaggaggaggaggaggaggaggaagagaagaaggAGGAAGCCACCAGAAAAATGCCCAAAGAGAGGCCTTTAGCTATGGCACTGCAGATCCTGCTGCCATTTCTCCTTGCAGGCTTTGGAACAGTGTCAGCTGGTATGGTGTTGGATATTGTACAGCACTGGGAGGCCTTTAAGAACATCACTGAAATCTTCATCCTGGTTCCAGCTCTCCTAGGTCTGAAAGGTAACCTTGAAATGACCTTGGCTTCCAGGCTCTCCACTGCGgtCAATGTGGGAAAAATGGACTCTCCCATAGAGAAGTGGAATTTGATCATTGGGAATTTGGCACTAAAACAGGCCACAGTGGTGGGGTTTTTGGCGGCTGTGGCGGCTGTCATTCTGGGCTGGATCCCTGAGGGAAAGTTCCAGCTGAGCCACGCGGTGCTGCTGTGCTCAAGCAGTGTTGCTACAGCGTTCATTGCATCTATGCTGCAAGGAATCATAATGGTGGGTGTGATTGTGGGCTCTAAGAAGACTGGTGTCAATCCGGACAATGTGGCCACACCGATTGCTGCCAGTTTTGGGGATCTCATCACGCTTGCCATTTTAGCGTGGATCAGCCAAGGTCTATACAACTGCCTTGACAATCACCCTTATGTGTCCTCCCTCGTGTGTGCCTTCTTCCTGGCTCTGACGCCCCTGTGGATCGTCATCTCCTCTAAGCACCCAGCAAGCCGCACACTGCTATACTCAGGCTGGGAGCCTGTGATCACGGCAATGGTCATCAGCAGTCGGATATCTACACACCTGCACTTCCACAGTATGCCTGGGGAGGTGCCAGAGGAAGCCAAGGGCTGCTACTACCCCTGTAGAACGTTTTGTGGGGCAGGAGCCAATCACCGTTCAGCCCAAGTGCTGCTCCTCCTGGTCGTTCCTGGTCATTTGATCTTCCTCTACACCATTCACCTGATGAAGAGTGGCCACACCACGCTCACGCCCATCTTCATGACTGTGTACCTGGCTGCTGCCTTGCTACAGGTAAAAACAGCCAAGTGCACAAACATTCACCTCAGAGATGTAACTATGTAG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K15122 SLC41A; solute carrier family 41

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012815 True 1428 mRNA 0.53 8 8854081 8872158

Neighbor

gene id symbol gene type direction distance location
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding upstream 9730 8823497 ~ 8844351 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding upstream 54643 8795168 ~ 8799438 (+)
AMCG00012807 NA coding upstream 246704 8571458 ~ 8607377 (+)
AMCG00012798 NA coding upstream 410439 8442404 ~ 8443642 (+)
AMCG00012785 LOC103366393,LOC100698773,LOC102312910,LOC101485159,LOC102205266 coding upstream 776934 8041802 ~ 8077147 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding downstream 167164 9039322 ~ 9043541 (+)
AMCG00012816 NA coding downstream 192159 9064317 ~ 9077901 (+)
AMCG00012819 NA coding downstream 223254 9095412 ~ 9111776 (+)
AMCG00012828 btg1,LOC106609569 coding downstream 379036 9251194 ~ 9254555 (+)
AMCG00012832 NA coding downstream 503009 9375167 ~ 9382501 (+)
G39951 NA non-coding upstream 186617 8666754 ~ 8667464 (+)
G39838 NA non-coding upstream 584860 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 721517 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 944915 7906257 ~ 7909166 (+)
G39669 NA non-coding upstream 1118813 7714497 ~ 7735268 (+)
G40022 NA non-coding downstream 178929 9051087 ~ 9053819 (+)
G40041 NA non-coding downstream 219156 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 392720 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 422173 9294331 ~ 9294642 (+)
G40145 NA non-coding downstream 601387 9473545 ~ 9473868 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 284190 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 508226 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 1017867 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 1126253 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 1472522 7344450 ~ 7381559 (+)
AMCG00012818 NA other downstream 211504 9083662 ~ 9085700 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 240302 9112460 ~ 9130211 (+)
G40224 NA other downstream 1564749 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1668570 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3581081 12453239 ~ 12500402 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_027110 slc41a2b coding NC_007115.7 CM002888.2 9055488 ~ 9094690 (+)