AMCG00012818


Basic Information

Item Value
gene id AMCG00012818
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9083662 ~ 9085700 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012818
CCACGTGTCTCGGCACTGCAGTCCGCTCTGTTCAGTGGCCACACAGACACCATTGggaagatatatatttttttcttcttcttaaacGATAACAAATATAGTTCTGTTGCTGTTTACAGCTcatttagaaatgaaaataaatgaaagcgGCTTTATTCGTTCATTTTTATTGGTAAATAGGATTTAACATATAACGAGTGTATCTAATCAGATAAACTGTATTTCAATGATCAGGATTACTGACTTAATTAAGTAAAGTTCACCGGGcagaagataaatacataaacgtGTTTTTGTCCCCATCTGTTTCTCGACGTGACAAATCCCCACAGCTTTTTGTTATACTAGAATAGTACACTTCAATATGATAACGGAACTAAAGTTACTTTGGCAAGTGCAGTGGGGGTCGCTTTAGTGGGGCACACTGTACGGAAATGGCCGTAGAGTTCTGTGGAACCACAATGTCAATGGTTTgagggggaaagaaaaccacaagaatTACCACCAAAACAGGTTGATTGGATTGAAAACGAAGTCCGGGTGATACATCCTATCTGGAAATGCCAGCTGGTGTGTCTTGGCCCCGGTACCTCAGTATGTTTGGAGCTAGTATTATAGCCATGTTTGCTGGAGCTGAAGTTGTACACCAATACTACAGACCGGATCTGtcaATTCCTGAAACTCCTCCCAAACCCGGAGAACTAAGAACAGAACTCCTGGGCATAAAGGCCAGACATGAACCAAATtcacagaaacaatgaaaaatagaTGACACTTTTGGGATGGATTGTGggaatgttttggttttttttggtgggggggg
>TU49921
TAGTGGGGCACACTGTACGGAAATGGCCGTAGAGTTCTGTGGAACCACAATGTCAATGGTTTgagggggaaagaaaaccacaagaatTACCACCAAAACAGGTTGATTGGATTGAAAACGAAGTCCGGGTGATACATCCTATCTGGAAATGCCAGCTGGTGTGTCTTGGCCCCGGTACCTCAGTATGTTTGGAGCTAGTATTATAGCCATGTTTGCTGGAGCTGAAGTTGTACACCAATACTACAGACCGGATCTGtcaATTCCTGAAACTCCTCCCAAACCCGGAGAACTAAGAACAGAACTCCTGGGCATAAAGGCCAGACATGAACCAAATtcacagaaacaatgaaaaatagaTGACACTTTTGGGATGGATTGTGggaatgttttggtttttttt

Function

GO:

id name namespace
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012818 True 823 mRNA 0.41 3 9083662 9085700
TU49921 False 400 lncRNA 0.44 3 9084074 9085689

Neighbor

gene id symbol gene type direction distance location
AMCG00012816 NA coding upstream 5761 9064317 ~ 9077901 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding upstream 40121 9039322 ~ 9043541 (+)
AMCG00012815 NA coding upstream 211504 8854081 ~ 8872158 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding upstream 239311 8823497 ~ 8844351 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding upstream 284224 8795168 ~ 8799438 (+)
AMCG00012819 NA coding downstream 9712 9095412 ~ 9111776 (+)
AMCG00012828 btg1,LOC106609569 coding downstream 165494 9251194 ~ 9254555 (+)
AMCG00012832 NA coding downstream 289467 9375167 ~ 9382501 (+)
AMCG00012833 NA coding downstream 326626 9412326 ~ 9469248 (+)
AMCG00012834 NA coding downstream 548534 9634234 ~ 9691339 (+)
G40022 NA non-coding upstream 29843 9051087 ~ 9053819 (+)
G39951 NA non-coding upstream 416198 8666754 ~ 8667464 (+)
G39838 NA non-coding upstream 814441 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 951098 8057019 ~ 8132564 (+)
G39737 NA non-coding upstream 1174496 7906257 ~ 7909166 (+)
G40041 NA non-coding downstream 5614 9091314 ~ 9093846 (+)
G40119 NA non-coding downstream 179178 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 208631 9294331 ~ 9294642 (+)
G40145 NA non-coding downstream 387845 9473545 ~ 9473868 (+)
G40146 NA non-coding downstream 388273 9473973 ~ 9474220 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 513771 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 737807 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 1247448 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 1355834 7725488 ~ 7727828 (+)
AMCG00012763 NA other upstream 1702103 7344450 ~ 7381559 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 26760 9112460 ~ 9130211 (+)
G40224 NA other downstream 1351207 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1455028 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3367539 12453239 ~ 12500402 (+)
G40629 NA other downstream 3402875 12488575 ~ 12535929 (+)

Expression


Co-expression Network