AMCG00012819


Basic Information

Item Value
gene id AMCG00012819
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9095412 ~ 9111776 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012819
ATGTACTGAACAGTTGTCATACAGGAAAGCACATGAACCGGATGTAATTTACAGCGATGGAAGGATTCAGTCCcctaaatgaagaaaacaaagaggATACCTGCTTCTGTTTCAGTCGGAGAGGCACCATCTCCCCCTTCCTGTGTTCGGCTCCAGATGATTTACTGCAGGAACAAAACTTCCTGAGGTCAGAGATCTTCCCTCAGATAGACACACTTTATCAGGCCAGGGGAGCCCGCTTTAAAGCTGTGGACCTTCAGTGGGACAGGGGAAATCTGGAGAATTGGTCACCTCATCACCCCAATCTTGAACTTGTCTCCTCCCAACAACTGAAAATCAACCTGGACTACATCAACAATTCCCCTTTTTTCATATGCTTGCTGGGCCACCGATATGGGGAGTTTCGGCCTGAGAACTCCATTCCTCTGCCTGGTTCTGTTGCTAGTTATGAAGGATTGTCCAAAGTGGAGAGAAATCTGTATGTTGCCAGCAAGAATGGCTATCCCTGGGTACTCAACAGCAGATACCAAACCTATAGCTTGACAGAGCTTGAGATCACCCAAGCAGCTTTCCTGAAGGACCCCCAAGGTTGTTTCTTCTATTTCCAAGATTACTGCTTTGAGGAGGAGAAGGCCGCCTATGATCAGAGGAAGACCTTTCTGAGTGTTTTGTCCAACCAGACACAATATGAACAACAGAGGATGAAGGAGCTGAAAACAAGGATCATTAATAACTGTTTGCCTGTCAGGTTTTTCAGAAATCTGCAGGAGCTGGGAGACTTAGTGATTAAAGACTGGAGAAGTGTGATTGAAAAGCTGTACCCTCAAGACACAGTTTCAGGATGCAGTGgcCTTAAACGGAGCCATGAACATGCATGTCACGAAGCCTGGGCAGAGACACTCTGTCGGCGGTTTGTTCCCTGGGATCAGTCTTGGCAGCTATTTCAAACACTTGACAAGTTTGCTTTTTCCACCACTTCTGTTGTCAAATCACACGATTTAGTTGTTCCTGAGAGAACTTCAGAAGTTGAAAGAACAAGCAAAAACCAGGAAGAAAAATCAATTCTGCTGCTGTGTGGAGCTCGGGGATGTGGCAAGTCTTCTTTAGTTGCGAGCTGGCTTCAGGATTTCACGAAGAAGAACCCCCGAGTTGTGGTTGTACCATTTTATGTTGGTGCCAGTTCCACCAGCACTGATGTCAGGTCCTTCCTGAGACACTGCACTTTATACCTCCGTTGTGCATACTATGCCCAGTGCAAGCTGATACTCACGACCACTGTGTCAGATCTTTCCTACAAATCCATAAGCTGTCGGCAAGATGCACATGTCCTTCGTTGCCCTAGCCAGCTGGATCAAGATGTTAGGGGTAGGATCTGCCTCAAACACTTGGCGATGCCCTATAAGGAGATTCCAAAGTCGCTGCAAGAAAGTAGCATGGCCAATAAGCAGAGCCTTTCCCCAAGTTTTCTGTCTCTTGTGGGAAGTGAGTTGCAAACCTGCAGGGTTGTGAGAGATGAAGAGGAACTTTTGGAGGAGTATGTGGAGGCGCATTCGATCCAGGAACTGTGGGCTCTGGTGATAAAACGTTGGACCCAGGACTACAGCTGGGGTGTTGAGGAGACAAGCACCAATAAAAGGACAGTGTCCCTTTCCTGCGAACCTCCAACAGggcagcaggggtgggtGTGGGATGTACTGTGTTTAATACGCCTGTCACGTTGTGGACTAAGAGAAGAGGAGATCCTGAGCTTACTGGAGACCCTGGGGTATTGTGGGAGCCTGAGGGTCTTACCCCTTGACTGGGCTGTGTTCCGCTCGGCCGCTGGGCACTGGATTCAGGAGAGGCCTGGCGGTCTTCTGTGCTTTACCCACCAGTCTCTTTGCCAGGCTGTGGACTTGCACCTGCTGACTTTCTCACAAGAAAACCCCATCGGTCCAAAGACTTTTAATAGCAATAAGATGGCTTTTCATAGGATTCTAGCCCAGTTCTTCCAACAGCAGCAACGGACGCCCTGTAAGAGAGTGTTTTTGGAGCTGCCCTGGCACCTGGAACAGAGCCAGTCCTGGGGAGACCTGTACACCTTCCTTTCTGATCATGGGAGCATTGACTTCTTCTGCAGGAACTCTAAACAGTTTCCCCAGCTGAAGACAGACTTGCATAGGTACTGGAGGCTGCTGGCCAAAAAAGGCTACGATCCCCTCGTCTCCTTTCAGAGCTTGTTGGGCCAAAAAACTGAAGACTGCACCAGTGAATCTGAAGGAAGGAAGagcacaattacatttatagCAAATATGTTACTCCCACAGATCCAGGTCCAAGCAAGGCTGATAGCTTTCTCTGCTGAAGTTTTGAATGACATTGGAAAGACTCTGGGATATGAGCTGTTACTGCAGAAGGCCGAGAAACTTCTTGTAGAGGCTAATGTGAAAGACCAAACAAGTATGGACATCTTACTGAATGTGGAACAAAGCCTTGCAGAGTTGTACATTAGAATGGGTCAACGACAAGAGGCTGAGATATACTGTTGCAAAGCCCTGAACACCGCAAATGCCTTACTGACATGCTACCCTGAAAAAAGTGATGTCACTCAAAAAACTAGAGGCCACGTGCTGTGTAAATTGTGTCAGCTACTCATTGGAAGTGGATCCCCGGATGTCCCAGTCATGCTGAAGGAGGTCTGTGATCTTAATGAAAGTGCTCCCCACCCCTGCACTGAAGCCACAGTGAAATTCCTGCAGGGAATCAACAAGAGTGACAGACGACAAGCACTGGAACTCTACCAGCATGTGGTCAGagttaaagaaagagagaaggccTACACATTATCCCCGCAGCTGGATCGCACACTGGGATGCAGCCTAGCGTTTACACTTTGCAAATTAGGAAAACTACTATTAATGAACTCAAGTCCACAGGAGAAACGGGAAGCGATCACACTTTTACAAAAAGCTATGGATTTACGAGTCAGCTTCCTTGGCCCTGAACACAGACTAACCAGAGAAATACTGTGgattttaaaaaacaagactgaAGACACTGCTGATCCATGCAATACAACGTACATCTCACAAAGGAACGAAACTTACTACCATACAGGAAAGCGATACCTACAGATCTCTAGACCACAGTCTCATAcagtcctgagagagagacccAAAACTGCTTTTGAGTTGAGATCTGTtcctagcagcagcagtaggaCCATCATGAACACACATTCTCAGAACTGCTCAGCCTACAAGCCTTGGACCAAATGCCAAACCTCCATATTTGGGCCTTATAGCAACATCTGTGATTTGATTCCCGTGTTTAAGCTTGACAAACAAAGAGTATTCCACAAATCAGCTTGGTACCATGTGCCAGGGAGGTATCCAAATCTTCAACAGTCAATTCCCCCTAAAAGGCATCAGGTGCGGAGGATAAGTGAGAAAACATGACCAAACAACTGTACAAATCTATACTGTAAGGGAATCCCTTTTCACATGACTTGAATGCTTTAGATTATGTGGGAATGATTATGTAAATTTAGGGActatttacaatttatttaaaattgtagcTTTAACTTCTACCTTTGatcttatttaataattatattaccCTACCCACAAGGTGTCActgaaagataaaaacattaaacataaaatgtatttacacataCCTTTATGAGATGTGAATATATTGTAAACCTGTATACACTTTTGAAACAAGGAATCACTTGTGATTCCAAAGGCTCTCGAAGTGTATAACTTCAAACTGCTCCCAATCTTCTATGCACAGATGTCAGATGTAGAATTTAAcgtatttttaattgttgggtttatattttgtacgtttaattttattcttattcataAATGTCTGAATCTGACCGTTATTATGTGTTTGTAAAAAGTAAGTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012819 True 3904 mRNA 0.45 13 9095412 9111776

Neighbor

gene id symbol gene type direction distance location
AMCG00012816 NA coding upstream 17511 9064317 ~ 9077901 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding upstream 51871 9039322 ~ 9043541 (+)
AMCG00012815 NA coding upstream 223254 8854081 ~ 8872158 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding upstream 251061 8823497 ~ 8844351 (+)
AMCG00012811 LOC106584661,LOC105006114,LOC108420373,LOC107716646 coding upstream 295974 8795168 ~ 8799438 (+)
AMCG00012828 btg1,LOC106609569 coding downstream 139418 9251194 ~ 9254555 (+)
AMCG00012832 NA coding downstream 263391 9375167 ~ 9382501 (+)
AMCG00012833 NA coding downstream 300550 9412326 ~ 9469248 (+)
AMCG00012834 NA coding downstream 522458 9634234 ~ 9691339 (+)
AMCG00012835 NA coding downstream 590494 9702270 ~ 9723930 (+)
G40041 NA non-coding upstream 1566 9091314 ~ 9093846 (+)
G40022 NA non-coding upstream 41593 9051087 ~ 9053819 (+)
G39951 NA non-coding upstream 427948 8666754 ~ 8667464 (+)
G39838 NA non-coding upstream 826191 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 962848 8057019 ~ 8132564 (+)
G40119 NA non-coding downstream 153102 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 182555 9294331 ~ 9294642 (+)
G40145 NA non-coding downstream 361769 9473545 ~ 9473868 (+)
G40146 NA non-coding downstream 362197 9473973 ~ 9474220 (+)
G40203 NA non-coding downstream 1060478 10172254 ~ 10172463 (+)
AMCG00012818 NA other upstream 9712 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 525521 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 749557 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 1259198 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 1367584 7725488 ~ 7727828 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other downstream 684 9112460 ~ 9130211 (+)
G40224 NA other downstream 1325131 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1428952 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3341463 12453239 ~ 12500402 (+)
G40629 NA other downstream 3376799 12488575 ~ 12535929 (+)

Expression


Co-expression Network