AMCG00012820 (nt5dc3,LOC102307862,LOC107753643)


Basic Information

Item Value
gene id AMCG00012820
gene name nt5dc3,LOC102307862,LOC107753643
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9112460 ~ 9130211 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012820
ATGTCGTCCATGGCTTTGTCCCTTTTGAGTAGCCTGAGAAACGGAGACAGTTTGAAGAAATTACTAAACGGTTGCAAGGGTTTACACAGCGGCGGGGGAAGACGGGATTTTCGCAGCCGGGCTTCGGGGCCGAAAGGGAGGCAGTCGGGGCTACAATGGCTCGGTACCACCGGAGTGGCAAGGGGAGCCGAGCAGGTCTTGTCCCACCGTAGCCCCCCAAACAGGACTGCTCCTCTGTGTACCAGTGCAGGCAGCGGGCAGGACATGACCAGCTCGCTTTGGGCACTTTATAACGAGAccaaaaaacagacagaagAACTGGGACTCAGCAGAGCAGTTGGCAGTGCTGCTGACCTAtACCCTGAGGGTCTTCGGGAATATGACTATATATCTGATTTTGTCATCCGGGGTCTTCATTATGATGTACAAAAGGCTTTGCTGATGAAGATTGATGCCTTCCACTATATTCAGCTAGGAACTGTATACAGTAACGTGACATCCCTGATATTACTTTTCAGGGGCCTGCATCCAGTGTCGGAAAAGGAGGTCATCGCAATGTATGAAGGCTCTCATGTGCCTTTGGAGCAGATGAGTGACTTCTATGGCAAGAGTTCCCATGGCCACACCATGAAACAGTTCATGGATATCTTCTCTCTGCCTGAGATGACCCTGCTCTCCTGTGTCAATGATTACTTCATGAAGCACAATATTGACTATGAGCCAGTCCACCTCTACAAAGATGTCAAGGAGGCTATAGGAGACGTCCATGTGAGGGGAATAATGTACAGAGCCGTGGAAGCAGATATTgGAAAGTATATCCGATATGGTGAACAGACCCATGCAGTGCTGAGGAAGCTCTCAGAAAATGGAAAGAAGATGTTTCTAATAACAAACAGCCCGTTTGACTTTGTGAGCCGAGGTATGAACTACATTGTTGGGAAGGACTGGAGAGACCTCTTTGATGTTGTTATTGTGCAAGCAGACAAGCCTGGCTTTTTCAATGATCGGAGGAAgCCATTTCGGAGAGTGACAGACAAAGGGGTTCTGCTGTGGGACAGGATTCACAAACTGGAGAAAGGACAGATTTACAAACAGGGCAATCTCTATGAGTTTCTGAGGCTGACGGGCTGGAGAGGCTCCAAGGTGCTGTATTTTGGAGATCACATCTACAGTGACCTAGCGGACCTGACTCTCAAGCACGGTTGGAGGACAGGGGCCATCATCCCAGAACTGCGGCAGGAAATCAAGATCATGAACACAGAAGAGTATGTGCACACCACAACCTGGCTGCAGGGACTGACAAGCCTTGTGGAAAACATGCAAgtACACAGAGACCCAGCATCACAAATGGTTTTGCAAGAGTGGAtcaaagagagagaagcaatgagGTCAAGGACGAAGGACATTTTCAACCCTCAGTTTGGAAGCCTTTTCAGGACCTACCACAACCCTACCTACTTCTCCCGCCGTCTGTCCCGGTTTGCAGACATCTACATGGCTTCTCTCAGCTGCCTTCTGAACTACGACCTGCACCACACCTTCTTCCCCCGCCGTACTCCCCTGCAGCACGAGGCCCCCATGTGGCCCGACCAGGTGTGCTCCGGCGCACTGAAACTGCCCTTCCTGGCAGAGGCGGCTCAGGTCAAGTAG
>TU49939
TGAACCGCCGGAGTAGTTGTCGGTATTTAAACAAGGACCTGGAGCCGCATGCAGCTCAGACGGACGCGGCGAGGGTATTAGTCCGGGTGACAGGACCcagacttgtgtgtgtgtgtgtggctgtgcagTCCAGACCGTAACCAGCCATGTCGTCCATGGCTTTGTCCCTTTTGAGTAGCCTGAGAAACGGAGACAGTTTGAAGAAATTACTAAACGGTTGCAAGGGTTTACACAGCGGCGGGGGAAGACGGGATTTTCGCAGCCGGGCTTCGGGGCCGAAAGGGAGGCAGTCGGGGCTACAATGGCTCGGTACCACCGGAGTGGCAAGGGGAGCCGAGCAGGTCTTGTCCCACCGTAGCCCCCCAAACAGGACTGCTCCTCTGTGTACCAGTGCAGGCAGCGGGCAGGACATGACCAGCTCGCTTTGGGCACTTTATAACGAGAccaaaaaacagacagaaggtGAGTTGCGCTGTGAACTTGGCTTCTGAGACGCGTCCCCCCACGAAAACGGCATCTTAAAACGGATAATCCTACTTTCAGTTTTCACTAGATTGACACATCACGCTGCCCACGATGGGGTAATAATCAATGGGGAAGGGCAGGACTGAGGTCCGTGACAACACCCTGGGTGGATTGGTG

Function

symbol description
nt5dc3 Predicted to enable 5'-nucleotidase activity. Orthologous to human NT5DC3 (5'-nucleotidase domain containing 3).

NR:

description
PREDICTED: 5'-nucleotidase domain-containing protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012820 True 1650 mRNA 0.51 14 9112606 9130211
TU49939 False 642 TUCP 0.56 1 9112460 9113101

Neighbor

gene id symbol gene type direction distance location
AMCG00012819 NA coding upstream 684 9095412 ~ 9111776 (+)
AMCG00012816 NA coding upstream 34559 9064317 ~ 9077901 (+)
AMCG00012817 nfyb,LOC106561000,LOC107658836,LOC107656315,LOC107592261,LOC107743639,LOC107696291 coding upstream 68919 9039322 ~ 9043541 (+)
AMCG00012815 NA coding upstream 240302 8854081 ~ 8872158 (+)
AMCG00012810 aldh1l2,LOC106576152,LOC106609325,LOC107743541 coding upstream 268109 8823497 ~ 8844351 (+)
AMCG00012828 btg1,LOC106609569 coding downstream 120983 9251194 ~ 9254555 (+)
AMCG00012832 NA coding downstream 244956 9375167 ~ 9382501 (+)
AMCG00012833 NA coding downstream 282115 9412326 ~ 9469248 (+)
AMCG00012834 NA coding downstream 504023 9634234 ~ 9691339 (+)
AMCG00012835 NA coding downstream 572059 9702270 ~ 9723930 (+)
G40041 NA non-coding upstream 18614 9091314 ~ 9093846 (+)
G40022 NA non-coding upstream 58641 9051087 ~ 9053819 (+)
G39951 NA non-coding upstream 444996 8666754 ~ 8667464 (+)
G39838 NA non-coding upstream 843239 8268994 ~ 8269221 (+)
G39776 NA non-coding upstream 979896 8057019 ~ 8132564 (+)
G40119 NA non-coding downstream 134667 9264878 ~ 9265093 (+)
G40121 NA non-coding downstream 164120 9294331 ~ 9294642 (+)
G40145 NA non-coding downstream 343334 9473545 ~ 9473868 (+)
G40146 NA non-coding downstream 343762 9473973 ~ 9474220 (+)
G40203 NA non-coding downstream 1042043 10172254 ~ 10172463 (+)
AMCG00012818 NA other upstream 26760 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 542569 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 766605 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 1276246 7835346 ~ 7836214 (+)
G39670 kcnj8,LOC108279966,LOC107725582,LOC107655555,LOC107587158,LOC107729834 other upstream 1384632 7725488 ~ 7727828 (+)
G40224 NA other downstream 1306696 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 1410517 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 3323028 12453239 ~ 12500402 (+)
G40629 NA other downstream 3358364 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 5298102 14428313 ~ 14433201 (+)

Expression


Co-expression Network