AMCG00012822


Basic Information

Item Value
gene id AMCG00012822
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9051577 ~ 9062325 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012822
ATGTGCCCCCTATCCCCGGCGGAGTGGGTTAACAACGGGACTATGGCTTCACAGAGTCCGCTGTGGAAGAAGGTGCAATCCTTCAGCGGTCCGGTGCCCCGGTCACGACACGGCCACCGAGCCGCCGCTATCCGGGAGCTGCTCATCGTCTTCGGCGGAGGGAATGAGGGCATCGCCGAGGAGCTGCACGTTTATAACACCGTGTCAAAACAGTGGTTCCTGCCCGCAGTGCGAGGAGACATCCCTCCCGGCTGTGCTGCCCATGGCTTCGCCTGTGAGGGCACCCGCATCCTGGTGTTTGGAGGCATGGTGGAGTATGGGAAATACAGCAATAGTCTCTATGAATTGCAGGCCAGCAGGTGGCTTTGGAAGAAGCTGAAACCTCGACCGCCCAGGAACGCCATGCCCCCATGCCCTCGCCTCGGGCACAGCTTCACACTGTACGGCAACAAGTGTTATCTGTTCGGAGGCTTAGCGAATGACAGTGAGGATCCCAACAGCAATGTCCCACGGTACCTCAATGACTTCTTTGAGCTGGAGCTGCAAGCGGTGTCGGGGGTGAAAGGCTGGAACATTCCAGAGACAAAGGGCACGGTCCCGTCAGCCCGGGAGTCTCACACTGCTGTGGTCTATAGCGCCAAGGGCAGCTCTCCAAAGCTTTATATTTTTGGGGGAATGCGAGGCTGTAGGCTGGGAGACCTCTGGCAGCTGGACTTAGAAACGATGACCTGGTCAATGCCTGAAACCAAAGGGCTGTCACCCGTTCCCAGAAGTCTGCATTCAGCCAATGTCATTGGAAGCAAGATGTACGTGTTTGGAGGCTGGGTTCCAGCTCGGAAAAGTGAAGACTTATCGAATGTGTTGGGTACAGAATGGACTTGTACCAACTCCTTGTCGGTGCTGAACATCGATACCATGACCTGGAAGTGTCTGGTGTCGGAGAGacaggaggaggggaaggggagcGGCCCGAGGCCCCGAGCTGGTCACTGTGGGGCCACCATCGGCTCCCGACTCTACATCTGGAGCGGAAGGGATGGCTACAGAAAGGCCTGGAACTACCAGGTGTGCTGCAAGGACCTGTGGTACCTAGAGACAGAGAAGCCTTCCACGACGTCAGCAGTGCTCCTGGTGAAAGCCACCATCAACATGCTCCATGTGGCCTGGCGTCCCCTCCCTGCGGCCGAGTCCTACCTGCTCCAGCTGCAGCCTGTCTCTGCCGGGCAGACTCCCGTTCCCCCCAGCCCCTCTGCCCCCGACCCACAGCCGTCCACGGGGCGGCCCAGTGCGGAGCAGCAAAAAGGGGGTGCCACCGCCTCCCTGCTGGGCCTATCAGCTGACACAGGTTCCACCCAGTCGCAGTCTACTCAGGACAAGGGAAGCTGCCTTCTCGCTGACAAGTCACTGGGAGGAAAGTCACCTGTAACACAAATGGAGACCACTGCATCTGAAACTGTTGTCCAAGAGAGTGCTGAGTTTGAAATGCCAGGTGGTGAAGACAGTGAGGCCTCTCAAACTCGCACTGTGGACCAGAAGCAAAGGACAGACGTTGCTCTCTTGTCCGCAGTGCCACTCGCTCTGGAAGATATCCTGGGCCACAGTGTGCCCAGCCTGACCCCAGAAGATGACTTGGTGAAACGCGAGCCTATGGAGAATGAAGTGTGTGACATTCCAGCTAATCAACAAACTCCATCTCTACCTCAAAACTCACAAGGGCAAGCCGATTTTACAGCAGCCAGTGCCCCAGCTACCTCAGTACCTTCTACTaatagcaacacacacacaGAACCTCCAGATGAAAAAGATGACACTTTCCGATGGTATGATGTTGGCATCTTTAAGACCCTCTTCTCAGAGGTAACGCACTATTATCTTCCAGCAGGAGGAAAAACAGTGATGGTTAAATCGTCTGATTCGTTAGACTACGAAGACCGGAAGCAGCAGGCCTTGACCCCTGGAGCCACCTACAGGTTCAGAGTGGCAGGGCTGAACAGCTGTGGCCAGGGAGACTTCAGTCCGGTCAGCGAATACAAGACTTGCCAGCCTGGCTTCCCGGGGGCTCCATCTTCAGTCAAGATCACCAAAGCTGCTGATTCTGTCCACATCACCTGGGAGCCACCCACATCCCCATCGGGCCGGATCCTGGAGTACTCCATGTACCTGGCCGTGCGCAAGTCCCGTTCCAGCAGCACCGACAGTGACGGCAGCACCAGCCCCCTGGCCTTCATCAGGATCTACAGGGGCACCAAGACCTTCTGCACCGTGTCCTCCACCCACCTGAGCAACGCCCACATCGACTGCACCTCCCGGCCGGCCGTCGTCTTCCGCATTGCTGCAAAAAATGAGCAGGGCTACGGCCCGGCCACTCAGATCCGGTGGCTGCAAGATACATATAAATCGAAAGCATTGCAGCCTCATCCACTAGCTGAGGGAGCTGGGAAACCTGGACTGCAAATGCCAGACAGcACGAGTTTGGAGAAGATTAACACCGAGACGTGAAGTCCCCAGAAACTGTCTTGAGAATATTTTAAGAGAGCCACTTACATGCTGTAAAACAATTCGGATagttttttacttatttttttatatttgtttttgtacatatatacatatattttttaccagTTTTGAACCAGTGTTGCAGTTAATAATgtaaaccactttttttttttttaatatatatatttttgggggtTTGGTTAATATTTGCGTTCAAGTGTATGTAACTTTAGCTGGGCTGTATCGATACAGATTAAATCCCCTACCTAACATCTACTCCCCACCTAAGGGTAGATGCACCCAGTGAACATATGAAATTGGACACCTTCTGATGAGATTGGTTGGATTAAATATACAGTTGGACATTCATGATGTAGATCTCAAAGAAGGGTACCACTAAGATCATGAATCTTACCTGAAAAGTGTTTGTAGTctgtaatgtatgtgtgtgtagttcTGTGATTACAAAGTGTGATATTTAAAAGGTTAATTTTGCTGCATGTGCATTGTAATCATGTGTGAGTGCAATATGTCTCAAATTCTGACCTTTCTTTCTGTCGCAGCAAGTAGGACAGTCCTAGTCAACCTCTAGTGTTATGTATgcattgtgtctgttttgaaatgaaaatgacttgGATTATTGTGATTGGCATTAGAGCACTTTAAACTCGGCATTGTAGTACTGAATGTTAGTTTGAATGAGGGGAGGATTTCAGTGGAGGCTGCATCATGAAAGCTAAATAGGTCTTGCAGAGAAtcagattttcagttttaaatgtatagcaggatagtatttcttattttttaagcatAGCAATGCACGTTAGTTTAATGGATTAGAGACTTTAAAGGTGTACTAGAACATCAGAAACTGTATCGGTACAGCCTATATTGTGTCTTGGCTACTACAAGAAGGCTGATGCTGGGCTTGGAAAAcaggttaatttaaaaatcGACTACAGTTTAGAATTGATGTTGCAGTGAGCTGTGGGGATGGGGAATTGATGCTTCAGGCATCTGAAATAATTTCTTATCCCCTTCAAATTTAAGTTAAAGAGTGGTGTGTCATATGGAATACTGGTTTGCTTATCgttaatttacatttcataactATAGATCTACAAGATTTATAGGGAATTGGAGTAACCTGACTTTCTGGTTTGATAAATAATGAGAATTGAGAATTTTCTGTCTAAAGATACTGTATTGGCATATGGCTTTTAGAGcgaaaaaaacgaaaaacagacaaattaaaacagtttagTGGTTCAAACAATCTACCGCTTTTTACATGTATATGGGAGAAAGCAAACTGCAAATATGATTGTTATTCCTAGGATTAGTCACAGCAAATGTATGTTATTAGTGATGTTCCTTTTAGAAAGGAGGGTATAAAAATATAGTTTGTGTAAAAAATGCAACTATCTTAATGCAAGTATGTTACACTTACTAGCACAGACCGTAAACATGTAgcctaatgtttatttgttgCCAATTTCACTGGGTGTCTTTGAAGTTACTTAAATGTTTTCTactttcattaataaaaatggtgCTCAAGGCTTTTAATCAGTCTGAATAATGTAAAGTAGAAAGTTGATACTTCTGACATTACCTACCTTTTGCCTTTTAAAGTGGATGCATTTTCAgtcaatttaatgtattactacAGGTGCTGCAAGACATTATCCTGATATTTCACTGCAATGTCTGAAATCCTTTTATTTGCTACAGTGGGTAAAACCCACGCtttatttaaatggtatttGTATACAAACTGAAACTGATCAAATGGGGGAAATAGTGTCAATTTTAGTATCTGTGAAATCATCGAAGGAAATTTGAACTTGTGCTTTGCAGATCTACATTAGTGAAAGTAGAACACAAATATTACACCGTATATAAACTGGAGGTTGGTGCATTAAATTACttctaatttaatattatattggtATATTCTATGATATTGAATTTCACAATTTTCAAAAATGTCccatgttcacattttcttgtaaGAGGAATAATCTGTAAATGTTGATCATGACAACAGTAAATCCAATTATTTAAATCCAACATGCTGCATTTTTTCTCTGATCTTGTGTAGCTTGGTGACTCGCATTTCTAAATTTCTGGAACATTTCTTGACTTCATATTTGATCTATAATTACTATATGGACTTCTATAGGAAGAAACTAAGGAAAACATACATAGGGATTATGTAT

Function

GO: NA

KEGG:

id description
K14966 HCFC; host cell factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012822 True 4721 mRNA 0.46 17 9051577 9062325

Neighbor

gene id symbol gene type direction distance location
AMCG00012825 NA coding downstream 20227 9013361 ~ 9031350 (-)
AMCG00012827 NA coding downstream 83965 8915063 ~ 8967612 (-)
AMCG00012823 chst11,LOC106609345,LOC106576221 coding downstream 143914 8906842 ~ 8907663 (-)
AMCG00012821 NA coding downstream 202085 8846584 ~ 8849492 (-)
AMCG00012812 si:dkey-23p11.2,kiaa1033,LOC107678984,LOC107696292 coding downstream 230421 8802882 ~ 8821156 (-)
AMCG00012824 NA coding upstream 15563 9077888 ~ 9083331 (-)
AMCG00012826 hsp90b1,LOC107656288,LOC106609356 coding upstream 24693 9087018 ~ 9093930 (-)
AMCG00012830 NA coding upstream 90231 9152556 ~ 9170975 (-)
AMCG00012831 NA coding upstream 108941 9171266 ~ 9250923 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding upstream 818511 9880836 ~ 9882770 (-)
G40008 NA non-coding downstream 150096 8900113 ~ 8901481 (-)
G39952 NA non-coding downstream 384553 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 481688 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 782356 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 1223430 7827278 ~ 7828147 (-)
G40039 NA non-coding upstream 21335 9083660 ~ 9085793 (-)
G40115 NA non-coding upstream 174575 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 624485 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1163369 10225694 ~ 10225957 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 1487332 10549657 ~ 10551377 (-)
AMCG00012782 NA other downstream 1147122 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2355653 6638480 ~ 6695924 (-)
G39487 NA other downstream 2595399 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2987760 6052364 ~ 6063817 (-)
G38490 NA other downstream 6867414 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 50116 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 1678029 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 1795556 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3178071 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 3834195 12896520 ~ 12906333 (-)

Expression


Co-expression Network