AMCG00012824


Basic Information

Item Value
gene id AMCG00012824
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9077888 ~ 9083331 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012824
GAGCAGTCGATCGCTTGCTTCTTTGGGGGTTTTAATCTTAAATACGGTGTCctttttcatgaataaaaccaGTTCCCGGCGTAATTTGTAACAGGTATGTCACTGCTTTACACGATGTGTAGTTGCATGGGCGAAAAGCGCTTATTACCGCAAATGATCAAATATCTTCCCCTTTTCAGCGTAGGCCCCTGTGAACTCGTTGTgtcatattgttgttgttgttgttttaaattctcGACTGAGTTTTAACAATTGTGGGAAATGTAAGATGTGTAAATGGTAAATATTGTAACTGCAGTGTTTGTGAGCCCCGGAGCCCCGTTAGAGCGATTAAAAGACCAGGTTTCATTTGTGTCGGTCTGAACAAAAGGGGGGGGAAATTGACTGAGTATTTGAAATCACagttattattaatctatttaagTAAATCCACCATAACGATGGAAGAAAAGCAGTATGCATCTTTGACGGTCCCTACGGATTATCTGCAACATTGGTTCCAGTCAACTCAGCAGATCCAAGCCCTCCAGGCCACTCAGTATCACCAGATGTCGAACGTGTCTCCCTTCCTCGATGGATCTAAAGAGGAGTCGGAGATGACTGAGTTGTCTGTCCATCAGGAGCCTGCTCCTGCTCCAGTTCCAGTTCAAGCACCTACAAAGGGGAAGAGAGGTAGACCCCCAGGTAAAGACCCAAAGAAACCTGGAGCCAAGAAGGGCAAAGCAGCTGAGGGTTCTGCCGGGGGCAAGCAGGAGAAGATCTCGGATGCCTTCAAGAAGGTCAAGAGGAAAGTGGATCGCTTCAATGGAGTTTCTGAGGCGGAGCTCATGACTAAAACACTGCCGGACATCCTCACCTTCAATTTGGACATTGTGATTgtTGGAATTAACCCTGGATTGATGGCAGCTTACAAAGGACATCATTACCCTGGCCCAGGAAACCATTTTTGGAAGTGCCTTTTCCTGTCTGGTTTGAGTGATGCCCAGTTAAATCACCTGGATGACCTGTTATTGCCCGAAAAGTATGGCATAGGATTCACAAACATGGTGGAAAGGACAACCCCAGGAAGCAAAGACCTATCAAGCAAAGAGTTTCGTGAAGGAGGCAGAATTCTAGTAGAGAAACTGAAGAAGTACAAACCGCTAGTTGCTGCGTTCAATGGGAAATgtatttatgaaatatttagCAAAGAGATCTTTGGGTTCAAGATCAAGAAATTTGAGTTTGGAGTACAGCCACACAAGATCCCAGAAACCGACACAGTGTGCTATGTGATGCCCTCCTCCAGCGCACGCTGCGCACAGTTCCCCCGCGCCCAGGACAAAGTGCATTACTACATCAAGCTGAAGGAGCTGAGAGACCAGATCAAGGGCATAGGGACTACTGTAGGAGATGTACAAGAGACAGACTACAAGTTTGACTTGCAGCTGGCCAAAGAGGATGCAAAGAAGATGGCTATTAAGGAGGAGCAGTACGACCCAGGTTACGAGGCTGCTTTCGGAGGGGCTTACGGGGAAGCGGGACCAGAGGACAATGGCCACTGTAACTTTACACCCGCTGAACCAGAAGCCGCTAGTAAGGATGGTGCCCCAGCCCTGGCGCCCGGGCAGGTCCCAGAAGGACAGTGGATGATGCAGTCGTTTGCAGACCAGATTCCAGACATCGGTGGCTGTAGcacacaaccaccaccacaGCAGGGAGGAGAGACTGTCTGAGATGGAGCAGCTTTCCAGGAACTGCATGAGCACTGCAGTTTTAATGCAGTCACCAAGATACAGAACCTCAGTTCTCCAACTGAAGACTCGTTGTGCTgggtttttatatatatatatatagatgtatatataatacacctATTAGGTATTTCATATTGCATAAACTGGAGACCTCCTTAGTGAACTGTTCCACAATTAATTTTAAGTAGATTAGTTCATCCTGTGGAAACTactatttaaaactttttttttttttt

Function

GO: NA

KEGG:

id description
K20813 TDG; thymine-DNA glycosylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012824 True 1972 mRNA 0.46 10 9077888 9083331

Neighbor

gene id symbol gene type direction distance location
AMCG00012822 NA coding downstream 15563 9051577 ~ 9062325 (-)
AMCG00012825 NA coding downstream 46538 9013361 ~ 9031350 (-)
AMCG00012827 NA coding downstream 110276 8915063 ~ 8967612 (-)
AMCG00012823 chst11,LOC106609345,LOC106576221 coding downstream 170225 8906842 ~ 8907663 (-)
AMCG00012821 NA coding downstream 228396 8846584 ~ 8849492 (-)
AMCG00012826 hsp90b1,LOC107656288,LOC106609356 coding upstream 3687 9087018 ~ 9093930 (-)
AMCG00012830 NA coding upstream 69225 9152556 ~ 9170975 (-)
AMCG00012831 NA coding upstream 87935 9171266 ~ 9250923 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding upstream 797505 9880836 ~ 9882770 (-)
AMCG00012840 NA coding upstream 1340046 10423377 ~ 10436550 (-)
G40008 NA non-coding downstream 176407 8900113 ~ 8901481 (-)
G39952 NA non-coding downstream 410864 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 507999 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 808667 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 1249741 7827278 ~ 7828147 (-)
G40039 NA non-coding upstream 329 9083660 ~ 9085793 (-)
G40115 NA non-coding upstream 153569 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 603479 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1142363 10225694 ~ 10225957 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 1466326 10549657 ~ 10551377 (-)
AMCG00012782 NA other downstream 1173433 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2381964 6638480 ~ 6695924 (-)
G39487 NA other downstream 2621710 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 3014071 6052364 ~ 6063817 (-)
G38490 NA other downstream 6893725 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 29110 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 1657023 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 1774550 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3157065 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 3813189 12896520 ~ 12906333 (-)

Expression


Co-expression Network