AMCG00012827


Basic Information

Item Value
gene id AMCG00012827
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 8915063 ~ 8967612 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012827
ATGCCATGTGTGAGTGCTGGAGCTCTGGACCACAGCTGGGTCTGCTTCACTGAGCTGGCTAATATCCTCTGCACAGagATATTGTCAGAGCACAGAGACGTAATGCGTAGGAACCCATTTGCTGGGGATGTGTGCTGCCGGAAAGGCTCCCGAAACGCTCTACAGGAACTGTACAACCCCACACAGAGACTGTTTGATTATCTCAGCTACAGCTCTGTGCTGAAAGCTGTCAAAAGGCCTCTGCTAAAAGTGCACTTAAAAGCCCCCAGCCAGCCGTCCGTCCAGTTCCCCGTCTCCACAGCCTCTTTGGCGCCAGCTGAAGGAAATGCCTGCTACCTGGGATCACTTTTCAAGGGCATCTTCAAAATCCTGCTCTGCCTCAAACGGCCCTTCGGTTGTGGGGCCACATGGTACCTGGGATTCAGAAAGGAGAAGCAGAAACCGGTAGAAGAACAATTCCTGAGGGAAGCTAGACGGTTTCAGGAGATTCCCATATTCTCACAGTCATATAAACCGCACATCTCAGAGGTGGCGTACCGGGACACGGCATCATCATTAATATGTTAG

Function

GO:

id name namespace
GO:0007517 muscle organ development biological_process
GO:0030206 chondroitin sulfate biosynthetic process biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0047756 chondroitin 4-sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012827 True 567 mRNA 0.52 7 8915063 8967612

Neighbor

gene id symbol gene type direction distance location
AMCG00012823 chst11,LOC106609345,LOC106576221 coding downstream 7400 8906842 ~ 8907663 (-)
AMCG00012821 NA coding downstream 65571 8846584 ~ 8849492 (-)
AMCG00012812 si:dkey-23p11.2,kiaa1033,LOC107678984,LOC107696292 coding downstream 93907 8802882 ~ 8821156 (-)
AMCG00012814 scube1,LOC106609323,LOC106576154,LOC107726032 coding downstream 167503 8738170 ~ 8747560 (-)
AMCG00012813 scube1 coding downstream 233464 8667317 ~ 8681599 (-)
AMCG00012825 NA coding upstream 45749 9013361 ~ 9031350 (-)
AMCG00012822 NA coding upstream 83965 9051577 ~ 9062325 (-)
AMCG00012824 NA coding upstream 110276 9077888 ~ 9083331 (-)
AMCG00012826 hsp90b1,LOC107656288,LOC106609356 coding upstream 119406 9087018 ~ 9093930 (-)
AMCG00012830 NA coding upstream 184944 9152556 ~ 9170975 (-)
G40008 NA non-coding downstream 13582 8900113 ~ 8901481 (-)
G39952 NA non-coding downstream 248039 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 345174 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 645842 8268994 ~ 8269221 (-)
G39707 NA non-coding downstream 1086916 7827278 ~ 7828147 (-)
G40039 NA non-coding upstream 116048 9083660 ~ 9085793 (-)
G40115 NA non-coding upstream 269288 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 719198 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1258082 10225694 ~ 10225957 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 1582045 10549657 ~ 10551377 (-)
AMCG00012782 NA other downstream 1010608 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2219139 6638480 ~ 6695924 (-)
G39487 NA other downstream 2458885 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 2851246 6052364 ~ 6063817 (-)
G38490 NA other downstream 6730900 2183885 ~ 2184163 (-)
AMCG00012829 NA other upstream 144829 9112441 ~ 9152405 (-)
AMCG00012858 NA other upstream 1772742 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 1890269 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3272784 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 3928908 12896520 ~ 12906333 (-)

Expression


Co-expression Network