AMCG00012829


Basic Information

Item Value
gene id AMCG00012829
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9112441 ~ 9152405 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012829
ATGTTGGGGGGGCGGGTTCAGGACATGGATACCATTCTGTACCACATTGTCCTGTCTGAGAGATTAAAGGCGGACGATTTGCTCAATGGGATTCATCGTGAGACAATGTTGGGCTTTTCCTATCAAGTGGGATTCTTCCGACGTAGCGATCAACTGTTTATCAACGATGTCCCGCTGAACCTCACTAATGTGGAGACAAACGAAGGAGTGATTCATGGACTGGCAAAGGTTCTGGAGATCCAGAAGAACCACTGTGACAAAAACATAACTGCCATTGTTCAGGGGAAGTGTGGCGCCTGCTACGTTGAAAACATGTGTCCCTCAGGAACATCTGCGAtgATAAGGGAGTGCTGCAGTGGGTACTTCGGGGCGCAGTGTGAGGCCTGCCCTGGAGCTGTGGGCAAAGCCTGTTTTGCAAATGGAGTGTGCCAGGACAGAATTAATGGCACAGGAGAGTGCCAGTGCGACAAGGGCTTTAACGGGACTGCCTGTGAAATGTGCCAGCCCGGGAAATATGGGGTCAGCTGCGACCAAGATTGCCCTTGTGTCAATGGGCAGTGCAGTGATGGGATGCAGGGCGACGGGTCATGTGACTGTGATTTGGGGTGGCGAGGAGTCCACTGTGACAGCAGTAAGAATCGGGTCCAGATCTTTATCACACCATTACACTACATCACTGTGGACGCCTGTGAGAGTAACAACGGAGGATGTTCCTCTAATGCGATCTGTAAGAGAACCACTCCAGGGCGGAGGTCATGTCTCTGCAAGGCAGGGTACACTGGCGATGGGGTGGTGTGTCTGGaaatcaACCCTTGTATAGAAAATAATGGAGGATGTAATCCGAATGCAGAATGCACACATACTGGCCCGAATCAGTCTGCTTGTAATTGTAAGCGTGGTTATTCTGGAGATGGGAAGGAATGTGATGCCATCAACCCCTGTCGGACAAATAATGGCGGATGCAGTGATTATGCCACATGTATGCCAACTGAACCTGGTGAAAGGAACTGCACCTGCAAAACAGAATACATTGGGGACGGTTTGAAATGCAAAGGCACTGTCAGCAAGTTGAGTAGGTGGTATCGCAAAGGTGTAATGCCCCAGATTCTCCGTTATCACATCGTGTCCTGCAGAGCGCTCCAGCCCACTGATCTGACCGTCGCGCGCAATGTCACCACCCTGCAGGGAGATACCATAACTCTGACCTACTCCGAGGATACTATATACTTAAATCACAAGGCCAAGGTAGTGTCAAGCGATGTTATGAGCATAAATGGCATAATCCATGAAATTGACACAGTCCTTGTACCTGAGAACCTTCAAGTCATAGAGAAAAATGCCTTTGGATCTACACTGGACACAGATGTGCTAAGCTTTGTGAATAATCCTATCCATCAACCAGTCACCCTGTTCCTGCCCAAAGACCAGGCAATGTCCGCACTGCCACAGACGCAGAAGGACTTCCTCTATAACTCGCACAACAAAGACAAGCTGATAGAGTATCTCAAGTACCACATTGTCAGAGATGGAAAGGGTGATCTGTTTCtcaataacagaaaatgcaaGATTGTGGAAAGGCAGCTGGCCTTCAGCAATGGGATTGTTCATGGCATTGACTGCATGTTGACTCCTCCGAGCACCGGAGGGCGATGTGATGTCCTGAAAACTATTGATATTATGGGACGTTGTGGACGGTGTACAAGAGTGCCACTTTGTCCATTTGATAGCAAGCCTCAGAAGAAAATCAGCACGTGCGATATGAGAATGTCTTTCATCCAAAGAGGCTCTGGTTGCCAGTACACTTGTTCGGTGGTTCTTTGGGCTCCCACGTGCTGTTCACACTACTTCGGGCGAGATTGTATAGCCTGTCCTGGAGGCCCCGACTCGCCTTGTAGTAACCATGGGCAGTGTGACGAAGGGTACACCGGAACTGGCAACTGTACCTGCCACTCAGGATTCACAGGAGTGGGCTGTGAGCTGTGTCTCCCGGGACACTACGGCCCTGACTGTCAAGGTTTCTTGCTGCTGGTTTATTTCCTCATTGGCCATGTTTCTTCCCATATGGAGTCTGCCTCCTCAGTCCTAACTGTCTGCAACTGTACAAAAAATGGGCAGTGTGAGGAAGGAATCAAAGGAATTGGCACCTGCTTCTGCGATGAGGGCTGGACTGGGCCACGCTGTGAGAGCGAACTGGAGTGGACTAAACAAACCTACTACTGTCGATTAGACACAGATCCCATCTGCTCCCCGCCGTGTTCCCAGAATGCCGTGTGCCAAGAGAACAACTCCTGCGAGTGCAAGCCTTTCTACGAGGGAGATGGAAGAACGTGTACAGGTGGGTCTAAAGGTCACAAAGTCCTGGACTTTCTCGAACCTTACACATATATGGTGAACCTTTGCCAGCAACAAAATGGTGGCTGTGACAAGCTCTCCAAGTGCACACAGAGGGGCGTGATGGTGAACTGCACGTGCCCCAAGGGCTACTCCGGTGACGGTTACGTTTGTATCCCCATCGACCTTTGCGTCAACGATGACAACGGAGGCTGCCACGAACATGCTGTCTGCACCATGACTGGCCCGGGCAAGAGGAGCTGCCAGTGCAAGAACGGCTACATTGGGGATGGGGTGGACTGCGAGCTCAAGCAGCAGCTGGCCAACCGCTGCGATAATGACAACGGGCAGTGTCACAGTGACGCACAGTGCAGCGATCTGCACTTCGAAGACAAGACCGTGGGAGTTTTCCATCTGCGTTCCCCCAAAGGCCAGTACAAAATTAACTACAACGAGGCCCTGGAGGGATGCAAGAAAGAGGGGGCCACTGTTGCCACGTACCTTCAGCTCTCATACGCTCAGCAGGCCGGTTTCCACTTATGTTCAGCAGGCTGGCTGTTGGATGAGCGAGTGGCCTACCCCACTGCCTACGCCAACCCCAAGTGTGGCTTTGGACATGTGGGCATTGTGGACTATGGGACTCGCCTGAACCTGAGTGAAACCTGGGATACTTTCTGCTACAGGATGAAGGACATGAAGTGTGTCTGTAAGCCAGGCTACATCGGCGATGGCTACTACTGTAGTGGCAATCTTCTCCAAGTCCTCAGATCCAAACCCACATTCACCAACTTCCTCAGTcaagtACTGAACTATTCCTACACGTCTCCCCTCGGAAAGGATTTTGTAAATCGCCTGAATAATCTCACGATCCAGTCCACTCTATTTGTGCCCGACAACAGTGCAATGTTGGACAATGAGACTCTGTCCAGTCGGGACATCGAGTATCACCTTTCAGACGGCAGTGCCCTGTACTTCCACGATCTGACCAACGGGAGCAGGATCCCCACCCGGCTGGGCCACAGCCTTCTCATCTTGGGCTTTACCGACCTTTACAACTCCAGTGCCGTGACTGCTTCTCGGTATGTGAATAACAGGCACATCATGGACTGGGACATCCAGGCGTCCAATGGAATAATTCACGTTATTCAGGGACCACTGCGTGCCCCTCCACCGGAACCAACCCTTCACGCAGGACACAAGGCAGGGATCGGCGTGGGGCTGTTAATACTGGTCGTATTGCTTGCTGGAGCAGGATTCACAAGCTACCGTTACTACTCTCAGAGAACCAAGCCTTTCCAGTTTCATTATTTCAAGTCAGATGAAGGAGAGGATACAGCACCAGTGGAACCCAGTCCCAACATCTGCAACCCCATGTATGAACAGGCCCCTGCCTCCGCTAACACTTCAGCCTTTGGCGATTTCACAagcAATGACAAACACCAGCTGGTAAACAGTGGCCCATATGATCTGTTCCAGGAAGGGCAGTTTCAGTGCGCCGGAGCACACCTGGTCGGGCCACATGGGGGCCTCGTGCTGCAGGGGAGTACGGCGGGGGAAGAAGGTGTGGTGCAGGTCGTAGTTCAGAAGGCAGCTGAGAGAAGCCATGTAGATGTCTGCAAACCGGGACAGACGGCGGGAGAAGTAGCTGGCACCAATCCACCCAGGGTGTTGTCACGGACCTCAGTCCTGCCCTTCCCCATTGATTATTACCCCATCGTGGGCAGCGTGATGTGTCAATCTAGTGAAAACTGA
>TU49940
CGGACCTCAGTCCTGCCCTTCCCCATTGATTATTACCCCATCGTGGGCAGCGTGATGTGTCAATCTAGTGAAAACTGAAAGTAGGATTATCCGTTTTAAGATGCCGTTTTCGTGGGGGGACGCGTCTCAGAAGCCAAGTTCACAGCGCAACTCaccttctgtctgttttttggTCTCGTTATAAAGTGCCCAAAGCGAGCTGGTCATGTCCTGCCCGCTGCCTGCACTGGTACACAGAGGAGCAGTCCTGTTTGGGGGGCTACGGTGGGACAAGACCTGCTCGGCTCCCCTTGCCACTCCGGTGGTACCGAGCCATTGTAGCCCCGACTGCCTCCCTTTCGGCCCCGAAGCCCGGCTGCGAAAATCCCGTCTTCCCCCGCCGCTGTGTAAACCCTTGCAACCGTTTAGTAATTTCTTCAAACTGTCTCCGTTTCTCAGGCTACTCAAAAGGGACAAAGCCATGGACGACATGGCTGGTTACGGTCTGGActgcacagccacacacacacacacaagtctgGGTCCTGTCACCCGGACTAATACCCTCGCCGCGTCCGTCTGAGCTGCATGCGGCTCCAGGTCCTTGTTTAAATACCGACAACTACTCCGGCGGTTCATCATAACACAGGCTTTCGT

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)
ko04260 Cardiac muscle contraction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012829 True 4083 mRNA 0.52 31 9112999 9152405
TU49940 False 636 TUCP 0.55 1 9112441 9113076

Neighbor

gene id symbol gene type direction distance location
AMCG00012826 hsp90b1,LOC107656288,LOC106609356 coding downstream 18511 9087018 ~ 9093930 (-)
AMCG00012824 NA coding downstream 29110 9077888 ~ 9083331 (-)
AMCG00012822 NA coding downstream 50116 9051577 ~ 9062325 (-)
AMCG00012825 NA coding downstream 81091 9013361 ~ 9031350 (-)
AMCG00012827 NA coding downstream 144829 8915063 ~ 8967612 (-)
AMCG00012830 NA coding upstream 151 9152556 ~ 9170975 (-)
AMCG00012831 NA coding upstream 18861 9171266 ~ 9250923 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding upstream 728431 9880836 ~ 9882770 (-)
AMCG00012840 NA coding upstream 1270972 10423377 ~ 10436550 (-)
AMCG00012842 NA coding upstream 1284916 10437321 ~ 10441546 (-)
G40039 NA non-coding downstream 26648 9083660 ~ 9085793 (-)
G40008 NA non-coding downstream 210960 8900113 ~ 8901481 (-)
G39952 NA non-coding downstream 445417 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 542552 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 843220 8268994 ~ 8269221 (-)
G40115 NA non-coding upstream 84495 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 534405 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1073289 10225694 ~ 10225957 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 1397252 10549657 ~ 10551377 (-)
G40323 NA non-coding upstream 1576090 10728495 ~ 10728820 (-)
AMCG00012782 NA other downstream 1207986 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2416517 6638480 ~ 6695924 (-)
G39487 NA other downstream 2656263 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 3048624 6052364 ~ 6063817 (-)
G38490 NA other downstream 6928278 2183885 ~ 2184163 (-)
AMCG00012858 NA other upstream 1587949 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 1705476 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3087991 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 3744115 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 3962488 13114893 ~ 13115487 (-)

Expression


Co-expression Network