AMCG00012830


Basic Information

Item Value
gene id AMCG00012830
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9152556 ~ 9170975 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012830
ATGAGCAGCCACTCCAAGTTTGCAGTTAAGGCTATAGCAAGAATGGATGTTGCCATCCTTCCGCAACGAGAAGAGGAGGTCAATAAGGAGAAGCGCAGCTGGGCCTGTCCCTCCCTGGCTGTAGTCATGCATGCTTTAAAGAAGTTCTTCAACCAGAGTGCTGTCCTGGATACTGGGGACCTGATTGTATTGAGTGCCCAAAGACAGCAGAGGGTGTCTGCAACAACAGAGGAGTTTGTTCCGAGGGTCTGGCAGGCAATGGGACCTGTGCTTGTATGTTGTGTGCATGGGCTTTGCAACAATGGGATAGGAGGTGATGGGGTATGCACATGTTTTTCAGGATACAAAGCTCCAAACTGTGATCAGCCTATAGCTGAATGCACTGCTTTACAATGCCCACAGCATGCCAGGTGTATAGAAGAAGCCAACACTGGGAAACTCGTGTGTAAATGTTTGCCAAGTCACAAAGGAGATGGAACTCACTGTACGCCCATCAATCCCTGCTTGAAACAAGTCTGTCACTCAAGTGCTGTCTGCACCTACCTCGGCCCTAATCTCCACAACTGCAAGTGCGCAGAAGGGTACAAAGGTGACGGGCAGGTCTGCATGCCAGTGGATCCCTGCCAGGACAACTTTGGAAACTGCTCTCCAGACTccactgtttgtgtttatataggtCCCGGAAAGTCTCACTGTCGGTGTAAAAAGGGATTTGAGAACATGATAGCAGGAATTGGATGCAGCCTAACagacatttgcaaaacaaacaacacctgCGACAAGAATGCAAAGTGTGAGACCCTCCACCCAGAACAGATAGAATGCACATGCAATGAGGGATATGTTGGTGATGGGAAGACCTGCTATGGAAATATCATGCAAAGGTTACGAGAGCTTAATTCGGAGCCTGGTGGGAAGTGGACAGGGCAGCTTTCCAATGCCATCACACTGTTTGGTACACTTCCCAGTGAGAGTATAGTAGATGTCGCCCCGCTTCAGCATCTCATAACTCAGCTCACCTGCCGCTACATGCAGCTTCGAGAGGAATCGGTGGAAATGGGACTTGTTTCTGTGAGAAAAACTTCAAGGGATCTCGATGCCAATATTGTTCCGACCCTAACAAATATGGACCCAACTGTGACAAAAcatgtCCCTGTGTTCATGGAGAGTGTGACAATCGCCCAGAGAGTGACGGTTCTTGCAAAGAGGGCACCTGCCAGGCCACATACACAGGCCGGTTCTGTGAAAGACACGTACAGACATGTGGACCGCGTGTGGATAAGGCCCCAGTTCACACATGCTGTGTCCCTGTACCTCACTGACTGTACTTTACGCCAGTTGTGTAACATACCAAATTGTATTGTGTTCTGgaccatgtttttaattaaaacccctCTACAAAATGTGTCTCCTAAGGCGAAGTGTATAAAGACAGGACCTGGGACCCATGAGTGCAGCTGCCTGACTGGCTGGAGGGCTGATGGCGATGAATGTCAGGAAATCAACAAATGTATGGAGCCAGACAGGGGTGGCTGCCACCCGAATGCCACCTGCATCCACATTGGGCCTGGACTGAGTGACTGCGAGTGTAAAACAGGTTTCCGTGGAAATGGGATAATTTGTGAAGCAGTCAATCCATGTGTGGAACAAAATGGAGGATGTCACCTCATGGCATCATGTGAATACCTCTCTCCAGGAACATGGAAGTGTATTTGCCTGCAAGGATATGTTGGAGATGGGCGTATTTGTTATGGAAATGTGGCAACAgagCTATCTGCCATACCTGATGGGGGAGAATTCCACAAATGGGTGAATGATGCTGGTCTCTATCAGATGATCTCCGAGTACAATTTAACCCTGCTGGTGCCCTCCAATAGTGCAGTGGACAAAATGACCAAGGAAGATAAGGGTTTTTGGCTGACACGAAAGAACTTGCCAAGCATTGTGAAATATCACACAGTGCAAGGCATTTACCAGCTGACAGACCTACAGAATCGGTCTTCCTCTTCTCTGCTCTCGTTTCTGGGCAAAGCTCCCCTTCGCGTGGTGAACATAAATGGGGTGTTAATACCAGATCGCAAACTGAGTGAGGGTCTGCCCGAAATGCTTGCTAAGCTAAGCGACATGCCTGAATATTCGATCTTCAGAGGCTATCTAATCCAATACAACCTGACAGAGCAAATAGAAGAATCTGATGCCTACACTTTGTTTGCTCCCAATAACATCGCGATCACCGACTACGTGAAGCAAAAAGGCTCATTGaATTCTTCtatctaa

Function

GO:

id name namespace
GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012830 True 2277 mRNA 0.48 21 9152556 9170975

Neighbor

gene id symbol gene type direction distance location
AMCG00012826 hsp90b1,LOC107656288,LOC106609356 coding downstream 58626 9087018 ~ 9093930 (-)
AMCG00012824 NA coding downstream 69225 9077888 ~ 9083331 (-)
AMCG00012822 NA coding downstream 90231 9051577 ~ 9062325 (-)
AMCG00012825 NA coding downstream 121206 9013361 ~ 9031350 (-)
AMCG00012827 NA coding downstream 184944 8915063 ~ 8967612 (-)
AMCG00012831 NA coding upstream 291 9171266 ~ 9250923 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding upstream 709861 9880836 ~ 9882770 (-)
AMCG00012840 NA coding upstream 1252402 10423377 ~ 10436550 (-)
AMCG00012842 NA coding upstream 1266346 10437321 ~ 10441546 (-)
AMCG00012841 NA coding upstream 1273116 10444091 ~ 10489781 (-)
G40039 NA non-coding downstream 66763 9083660 ~ 9085793 (-)
G40008 NA non-coding downstream 251075 8900113 ~ 8901481 (-)
G39952 NA non-coding downstream 485532 8660448 ~ 8667024 (-)
G39929 NA non-coding downstream 582667 8568052 ~ 8569889 (-)
G39839 NA non-coding downstream 883335 8268994 ~ 8269221 (-)
G40115 NA non-coding upstream 65925 9236900 ~ 9257451 (-)
G40172 NA non-coding upstream 515835 9686810 ~ 9690911 (-)
G40206 LOC101154678 non-coding upstream 1054719 10225694 ~ 10225957 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 1378682 10549657 ~ 10551377 (-)
G40323 NA non-coding upstream 1557520 10728495 ~ 10728820 (-)
AMCG00012829 NA other downstream 151 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 1248101 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 2456632 6638480 ~ 6695924 (-)
G39487 NA other downstream 2696378 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 3088739 6052364 ~ 6063817 (-)
AMCG00012858 NA other upstream 1569379 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 1686906 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 3069421 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 3725545 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 3943918 13114893 ~ 13115487 (-)

Expression


Co-expression Network