AMCG00012834


Basic Information

Item Value
gene id AMCG00012834
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9634234 ~ 9691339 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012834
CAGAGATTATGCAAATTTACCAAGTGAtatgtaatgtgttttctTCAACAACAAAGCAACCAGTATTAGCTGCTTCAACAATCTGGTTCAAGCCAACGTCCGCAACAAAAAGGTTCTGAAAGACGCAATACAGGAGATAGAAGCAAAAGGAGTAACTAACTATAAAGAGGGCTTCAAGTTTGCCTTTGACCAGCTTTCAAATTTCAACGGCTCCCGTGCAAACTGCAATAAAATCATCATGCTCTTCACTGACGGTGGCGAAGAAAAAGCCCAGGAGATATTTGAAGAATACAACCCTGACAAGAAGGAACTTGGTCTTGTCATCACAGGAACACTGCCAGTCTTCAACAAGACACAGACTAAAGATGACAACGGCGAAAGCAAGAATCCTAAATTCCAGGAGCCAGTTACCTTGGATTTTCTGGATGCTGAACTGGAGAATGAAATCAAAGTACAGATACGACAGGATATGATTGATGGGCGCAAAGGAGAACGTACAATACATACACTGGTGAAGTCTCAGGATGAAATGCCACAGCCCACAGAAGtttcggAAACCATGCAACAAGAAAACTTTGATGAAAATGGCTATACATTCATAGCACCCAGtgCTGGGGAAGACTGGACAGAAAATGCTGAAACCTATGAAGCTAGCTTCTACAAGAGAACCTTGGATAATGATTTCTACATCTTTACTGCCCCATATTTTAACAAAAGCGGTGAGAGTGACTTTGAGTCTGGCATCATGGTGAGCAGGGCAGTTGACTTGAATATTGAAGGGAAAAAGTTGAAACCTGCAGTTGTTGGTGTCAAGATTAATGTCACTGCCTGGATGGCGAACTTCACAAAAGCGACAATGAAGAAAGACTGCAACAGCGAAATATGTGGTTGCAAGAAGAATGATTTGAATGTTGACTGTGTTATACTGGATGATGGTGGATTCCTGTTGATGTCCAATCAGGATGAGTATATCGCCCAGATTGGAAAGTTCTTTGGAGAAATCGATCCCATTTTGATGAGAAATCTCGTGAACATCTCTCTGTATGCGTTTAACAAGTCCTACGACTACCAGTCTGTGTGTGATCCTGAGAGAGATACCAAGGCCGCAGCTGGCTTACGTTCTGTTTATGTTGCTATTCCATGCTGAAAAGTTATCGAACACAAACTTAGTGTTCCTGATTGTTGAAGGCAAGGGAACCTGTAGCTCATGTGATCCAAAACTATTAATACAAGCAGAGCAGCCTTCAACAGGACCAGATCCTTGCGAATTATTTAAAAGCCCAAGATACAGGAAGGGCCCCGAAGTCTGTTTTGACAACGACATCAATGAGGATGATTCTGACTGTGGTGGGGTCTCTGGTTTGAGCCCGTCACTGTGGCCCATGGTAGGAATACAGCTTGTGCTACTTTGGCTCCTAACTGGATCAAAACATTACCCGTCATGACCTCAGAAACAATAACTGAGCCCaatactgcatacatttcaagatCCTGCCaaattttgtttctgaaaattatacatcgatggggaaaagaaaaaactcaaaTTCGCCCAACCCAGGAAGCAAAAAGACTGGTTCTATCCACGTCTAGGTCTAACCCAGTCTGGGGAAGCTTGATGAAATCCCCGAAAATGAAGATTGAACCATCAGAAGCCGAATGTTCCCACAAAAGACGGCGCTGTGAACTGTCTGACCCTTTCCTGGAAACGTGAGGGGAAAAGCAACTCCATGTAATGTTGTGGTTTGTCGGTGAGCTTCTCTGTCAAAAACTTATACTGCCAGACATTTGAAATTCATGACTACTGAAATTCATGAAGTGTTGCCCCTAGCCATTGTTTCTTAGTATTTTGTGTTGGcttgattgtttattttgaagggTTTGGCATGTCTCACTATCGAGCCACTGTGTGAGTTAAAACATGCTTTACGGTGCACTGCAGTCGGAAggatttttattcttttttttaatgtgcaaagCTGTGTTAAATAGTGAGGTGACGCCACATTCTCTTGGTTGTATTGCTCATTTACATATTACGGGTGCTAATGATTTGTCCGGATCAAGtcttgcgtttttttttttaatgaaaattatcTAATCAAACCATATGAAGttcattcacattttcactgACTGACCTCCCACATTTCCAgagataattaaatatgtatttctgtttgaaagaaatagaaatgaaaatgaCTGACTGTCATAGGCATTTTTCTCACCTCATCAAGCATTTAAACCAGTGATATTGACTATTTCAAACATCGTATTCACTCTTGAGTTTTAGATTTCAGATAAgatcacaagaaaaaaatacatcagtgaCAACTATGAAAGATCCTAAAAGGTCTGTCTTGTTTAATCATGCCAAAGGGGATACATCCATCTCTTCTTCTGCTGCATTGGCATATGTCAATTATTTGCAATACAACCTACATATAGAGAGTTAGCCAAACCTTTTTATAATGCTATGCTTGTTCtgatattcattttctttcttgttattttttgggctacaatgttttatttttttttgcatgattctgcttttttagttttttttattttatttgcacttgTTTTGATTGTAAATCTTGTTCTCGCAAAAGGACTGCTAGGTTGAAAATGACATTTGAGAAGTGACGAGTACATACATCTTGTGTATGTCTTGCTTTCTTTTGTGCAAGTAGCTGTATAATTTCCTGTGCACAAAGAGAGACAACATTCTACCTTTGCAAGCAGATTCTACTGTATGTGTAAAACCTTCCATTTTCAGGAGGAGGTGCAAGCCCTTCTTCTATTGGCTCAGCTTGTTTGCAGTGATTAGTGAAGAGATTGTGAATTTACcatatttgtgaaaatatttttcaattctGACAccaatcaaatataaatattacattttgctgGGCTTAAATAAGAGGTGTGTTGATactaataagaaaaagaggaatgaaaacaaacaacacagagcAACATTTTCTAGAGAAAGCAACAACATACAAAAGCATTATTTTGTTGCACATCAACACCAGTTTAAGTACTGTTCAAAACTACAACAGGAATGAAATACCTTTCTTTAAGACTAAACACACCTAAAGTGTCATTGCTGTTCACACAACATGTTCTCATCTTGAGTGACCGGTCTCTATCTGTTGTTCATAAATCTCGCTTACTGGTTTATTGGCATTTCGAATGTGCAATCACTGatgaaaatcaaatcaaaaatctaaaaatcaaaaaataaaactcacacTCGATTAGCGTTCAACCCATAGACCCATACTCTATTTCATTTGCAAAGCTTGAAAGACTTTAACTTGACTGCCgctatttaattttgaatgatCTCGTCCATTCATAAAGGAAATTACTCTTTTTCTTACGTACCAATATAATCACTAGATGATTCTCCAGTGTTTTATCCATTAACattcacataaataaaaaatctattagAATTGAATCATATGTCACAAAGTGATTGACAAAACTCCATCTACAAGGGTTTTATAagattggttttttttttaaagatgtacaaTTATCTAACATCGCTTTAGGTTTTGGATGCATAGACATTTTAATGGGCAGTCTTTTTATAGCCAGGCCAATCCAAATCAACACTTTGACCCACCAGccaattacatatataaatatgtagaaGAAAGTATCCGTCAAACAGTCATCAGGTATTTGACATGATTTGTGACTGgcagatgggtcaaagtttcGATTTGGTCTGAACCTCAGTGACAGCTCATGTTGTCATAGATACCACCTCAAACCAGCAAGTAACTCcttcctgttttaaaatgtacttgttgTGGTTTATGGTCTATTATATGAGCATTTTGAATGCCATTCATAATTAGTGTACAATCCAAGACATTAAATGCCATTTTCTAGCATATCTTTGTAACGATTTGACGCAGAATTGCAAAAGTGTAATATAAGCTGACTTTTAATCAGTAGAAACAGTTTATGGTCCATAATTAAAAAGATTGCCCCATCACATGCATTTGAATTTTGCACTTCCGTACTTAACATTGTACTTTCGAGTTTGAAAcaactgtttttttaactttaaacctGAAAACAGTTTTGTCATGTGACTTTCAAAGTGTATCATTCATAAACATTTCGGTTGACTTTTTTCGGTAACATTTTCATTGGTATTTGTCAATGATGGTGTCTGACTAACTTGCTAGTCAATACTGCAAATTAATCTTcaacatttacagaaaagtTTCAGTTCAGGGAATAGTTGAGTACAATGGAAAATGTTGCATGTGGGGTGCAATTGAAACTTGATTTCATTACATGCACTTCAGAGATCCAGGTCTCCCCTGAAATACCTTAAAAATTCTCAgtaagtaaattatttttataagatATTCCATCACCATCAGACAGACAACCCATcacttttttttcagttatttattactttattacttaTGACTAGCTGTCCTTAGGCGATGTTCcagcaaaacatacatttatagaaTAAGTCATCCTGTCATCATCAAGTGATCCTACCATCATATATTTTCTAAAGTATCTCAATTATGTGCCATAGGATTTTTCAGAGATCTGTGTATGGAAAcctaaaatagaaaatgaaatgtaaggAGGAGTCACGGGTCCAACATAAAGGCATATTTTGATGACATTACGCCCTGGCTGCATGGCTTAACACCAGTGACAGACAATGAGAATATAATCTTTATACTCCTATTTAGGTATTAAATTTGCAAAAGTATAATACAGTGAATATTGAAGCCTTTGTTTTTGACTATCGATCAGCACTACTGCCGTTTTCCTGAGAGACAGCATTTGATTTTTAGGTTGGTATTTATGGGGGGGGAAAAATCATTATGCAAGTGAAACTAATCCTTGAAAAGTGGAAACATCATTAAAGCTCAAACTATTTGCATAAATGGTGTGTCTTTACTATTTGTTACTATGTACTTGAATgacaagaaagggaaaaaatgcaGCTATGGTAATGAATACAAAGTTAGTGAAagttttcagaaaatgaaatggagcTTTTGGGAAATGGTGTTAAAATAGATATAAAGTATAACCTAGATTGAAGGCATTTTCATTCTGATACTCACCTAATCCAGATGCTGTCTCTTCAGGATCAGATATTGCGATGTAATTGGAAGTGTTTTTAATGCTGTCAATGCTCTTTGTGCAGATTGTCTGGGTCATGCTTTTTCTGGACTGTTTTCTTGAGATTGCTTGATGTGTGTTTAATTGGAGGGCCCCTTCACTGCGATGTGCAGGCAACTAACCGGCCACTCTTAATCTCCCTTGATTGTGCTTTAATACATTACACTTTTGTGGAACTTGACAAGCCTGAATCGATTTTTGTATAAAATttgtacaataataatgttattaaacagaaaaaaaacatgtttataatcCTAGAAATGTTGTGTTAATTATTGTGcaaatacagtatattcagAATAAAAGTTTATCATTATTGTCTGTTAAAATGTCCTCTTCTTAACGTAGAGCCTTCGGTTTCTATGAAATAACAATGTCTAAACTGTAAATACAGATTGAACCATCCAAGTATCATTCCAATAATTCATTTCAGTCAAGATAAGTGTTGGAGTGCACCCAGGTTCCCAGATCtcaattgaaaacaataaatgaatctGAGCTTTCTTGGAAAGGTCTGAAGTTCTAATTTACTCCAGTTGACATATTGCTGAGTTAGTGCTACAACATGGGCAGTTGGGATTTTGCAGCTCTGTTGGAAAGCTTTGGAGCTGAGGTCACAATCCCAACAACAACGTGTCTCTACTCTTATTGCAAGTGTGCTTGCATGGTATTTCATTGGCCA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012834 True 5878 mRNA 0.37 17 9634234 9691339

Neighbor

gene id symbol gene type direction distance location
AMCG00012833 NA coding upstream 164986 9412326 ~ 9469248 (+)
AMCG00012832 NA coding upstream 251733 9375167 ~ 9382501 (+)
AMCG00012828 btg1,LOC106609569 coding upstream 379679 9251194 ~ 9254555 (+)
AMCG00012819 NA coding upstream 522458 9095412 ~ 9111776 (+)
AMCG00012816 NA coding upstream 556333 9064317 ~ 9077901 (+)
AMCG00012835 NA coding downstream 10931 9702270 ~ 9723930 (+)
AMCG00012836 snd1,LOC107738807 coding downstream 60297 9751636 ~ 9770671 (+)
AMCG00012838 snd1,LOC102797100 coding downstream 191785 9883124 ~ 10314250 (+)
AMCG00012839 NA coding downstream 717988 10409327 ~ 10410281 (+)
AMCG00012843 NA coding downstream 780526 10471865 ~ 10492477 (+)
G40146 NA non-coding upstream 160014 9473973 ~ 9474220 (+)
G40145 NA non-coding upstream 160366 9473545 ~ 9473868 (+)
G40121 NA non-coding upstream 339592 9294331 ~ 9294642 (+)
G40119 NA non-coding upstream 369141 9264878 ~ 9265093 (+)
G40041 NA non-coding upstream 540388 9091314 ~ 9093846 (+)
G40203 NA non-coding downstream 480915 10172254 ~ 10172463 (+)
G40214 NA non-coding downstream 683692 10375031 ~ 10424371 (+)
G40303 NA non-coding downstream 1049093 10740432 ~ 10743104 (+)
G40436 NA non-coding downstream 1412486 11103825 ~ 11159087 (+)
G40496 LOC103376870 non-coding downstream 1602878 11294217 ~ 11354359 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 504023 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 548534 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 1064343 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 1288379 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 1798020 7835346 ~ 7836214 (+)
G40224 NA other downstream 745568 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 849389 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 2761900 12453239 ~ 12500402 (+)
G40629 NA other downstream 2797236 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 4736974 14428313 ~ 14433201 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1712410 NA non-coding NC_048585.1 CM023239.2 17243303 ~ 17247387 (-)