Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00012836 |
| gene name | snd1,LOC107738807 |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 9751636 ~ 9770671 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| snd1 | Predicted to enable RNA binding activity and nuclease activity. Predicted to be involved in RNA catabolic process. Predicted to act upstream of or within gene silencing by RNA. Located in cytoplasm. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1). |
| description |
|---|
| PREDICTED: staphylococcal nuclease domain-containing protein 1 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0031047 | gene silencing by RNA | biological_process |
| GO:0016442 | RISC complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0004518 | nuclease activity | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| id | description |
|---|---|
| K15979 | SND1; staphylococcal nuclease domain-containing protein 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00012836 | True | 1116 | mRNA | 0.50 | 11 | 9751636 | 9770671 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00012835 | NA | coding | upstream | 27706 | 9702270 ~ 9723930 (+) |
| AMCG00012834 | NA | coding | upstream | 60297 | 9634234 ~ 9691339 (+) |
| AMCG00012833 | NA | coding | upstream | 282388 | 9412326 ~ 9469248 (+) |
| AMCG00012832 | NA | coding | upstream | 369135 | 9375167 ~ 9382501 (+) |
| AMCG00012828 | btg1,LOC106609569 | coding | upstream | 497081 | 9251194 ~ 9254555 (+) |
| AMCG00012838 | snd1,LOC102797100 | coding | downstream | 112453 | 9883124 ~ 10314250 (+) |
| AMCG00012839 | NA | coding | downstream | 638656 | 10409327 ~ 10410281 (+) |
| AMCG00012843 | NA | coding | downstream | 701194 | 10471865 ~ 10492477 (+) |
| AMCG00012844 | NA | coding | downstream | 761308 | 10531979 ~ 10534605 (+) |
| AMCG00012850 | calua,LOC108432523 | coding | downstream | 775880 | 10546551 ~ 10550066 (+) |
| G40146 | NA | non-coding | upstream | 277416 | 9473973 ~ 9474220 (+) |
| G40145 | NA | non-coding | upstream | 277768 | 9473545 ~ 9473868 (+) |
| G40121 | NA | non-coding | upstream | 456994 | 9294331 ~ 9294642 (+) |
| G40119 | NA | non-coding | upstream | 486543 | 9264878 ~ 9265093 (+) |
| G40041 | NA | non-coding | upstream | 657790 | 9091314 ~ 9093846 (+) |
| G40203 | NA | non-coding | downstream | 401583 | 10172254 ~ 10172463 (+) |
| G40214 | NA | non-coding | downstream | 604360 | 10375031 ~ 10424371 (+) |
| G40303 | NA | non-coding | downstream | 969761 | 10740432 ~ 10743104 (+) |
| G40436 | NA | non-coding | downstream | 1333154 | 11103825 ~ 11159087 (+) |
| G40496 | LOC103376870 | non-coding | downstream | 1523546 | 11294217 ~ 11354359 (+) |
| AMCG00012820 | nt5dc3,LOC102307862,LOC107753643 | other | upstream | 621425 | 9112460 ~ 9130211 (+) |
| AMCG00012818 | NA | other | upstream | 665936 | 9083662 ~ 9085700 (+) |
| AMCG00012803 | sult4a1,LOC102784496,LOC106576158 | other | upstream | 1181745 | 8536233 ~ 8569891 (+) |
| AMCG00012797 | NA | other | upstream | 1405781 | 8335898 ~ 8345855 (+) |
| G39709 | LOC101154678 | other | upstream | 1915422 | 7835346 ~ 7836214 (+) |
| G40224 | NA | other | downstream | 666236 | 10436907 ~ 10444447 (+) |
| AMCG00012848 | NA | other | downstream | 770057 | 10540728 ~ 10541960 (+) |
| AMCG00012894 | gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 | other | downstream | 2682568 | 12453239 ~ 12500402 (+) |
| G40629 | NA | other | downstream | 2717904 | 12488575 ~ 12535929 (+) |
| G40999 | metap2,LOC108428789,LOC100194705 | other | downstream | 4657642 | 14428313 ~ 14433201 (+) |
