AMCG00012838 (snd1,LOC102797100)


Basic Information

Item Value
gene id AMCG00012838
gene name snd1,LOC102797100
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 9883124 ~ 10314250 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012838
ATGGCTCCTAtttttttttttttgagggagGAGGCAGGCTCAGAGCAGTCTGTCAAGTCCAAACCCTTGGAGCATTTAGAACTATTTTGGTCCCCTGTTGAGGAAGATACAAGACAAGCCAATAAATTGCCCTTTCCCCTCCAGCAGAAGGTGGTCTTTGAAATGAGCCAGAACAACTCCGAGCTCGAAGACACCCAAGCAAACATTCAGGCTGATCAGAAGCGGCTGCCGGTTGAAGTAGAGGTGGAAAGCATGGACAAGGCTGGCAATTTCATTGGTTGGCTTCACATCGATGGCGTGAATTTGTCGGTGGCCCTAGTGGAACATGCTCTTTCCAAGGTCCACTTCACAGCTGAAAGGAGCTCCTACTACAAGACCCTGCAGTCGGCTGAGGAATCTGCCAGGCAGAAGAAAGAGAAGGTCTGGGCAAACTATGAAGAGCAACCTCCAGAAGAAGTCGTCCAAGTGACTGAGGAGAAGGAAAGAATTGTCAACTACAAGCCAGTCTATGTGACAGAAATTACAGATGACCTCCACTTCTATGTTCAGGATGTTGAGACTGGCACCCAGTTGGAGAAGCTGATGGAAACGATGAGGAGTGAGATTGCGTCTCACCCGCCTGTCGAGGGTTCCTACTCGCCGCGCAGGGGAGACTACTGCATCTCCAAGTTTGCAGATGGGGAATGGTACAGAGCACGAGTGGAGAAAATGGAATCTCCCACAAAAGTCCATGTGTTTTATATCGACTACGGCAATAGAGAGACAGTCCCTTCTACCCGCCTTGCAGCTCTTCCCCCAGCTTTTAACATACGGACCCTGTCTGCACAAGCCACAGAGTATGCTTTTGCCTACATCCAGGTCCCTCAAGATGAGGACTCCCGTGCCGATGTGGTGGACAGTGTCGTGCGGGACATCCAGAACACCCAGTGTCTGCTGAACGTGGAGTACACTTTGGGCAGCTGCCCCAGTGTCACATTGCAATTCTCCGACTCCAAAGATGACGTTGGTCTCGGGCTCGTCAAAGAGGGCATGGTCATGGTGGATGTGcggaaagaaaaacatctgcagaAAATGATCACCGAGTACCTGAATGCACAGGAGTCTGCCAAGACTGCCAGGACCCTCAATGACTTCCTGCTCCCTTGGGGGAGAGAAATCTTTTTAAGGTATTCGCTGTGTCTTGACAATTTCAAGATCCAACAGAAACCATTTATCACAAGCAATGGAGACAGCGGTGATGAGCTGGATTACCGATTCAAGGAGTGGAGGAGTAGGACTGGTGCCGGGAGAAGCGAGCGAGCTGCTAGGGTCTACCGGCGGCAGATGACCAGCGAAGAGAGACGCTGCAGTGAACCAGCTGTTGGTCTGAAGACAGAGCGGGGAGCTGTATACCAAGAGTGGTCTATTCCACTGGTTCTGGGAGGGGGGGACAGCCCTGGCTTGAGTTTCCCTCACCAGTGGGCATTCGAGGACACCGACCAAGGACAAGGAGGGAGGCAACATGGAGTACGGAGTGctctCATTAAGGAAGAGGATAAAAGTGCTTTAAAACGGAGCACAGAGCTCTTGAGGTTGGCTTAA

Function

symbol description
snd1 Predicted to enable RNA binding activity and nuclease activity. Predicted to be involved in RNA catabolic process. Predicted to act upstream of or within gene silencing by RNA. Located in cytoplasm. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1).

NR:

description
PREDICTED: staphylococcal nuclease domain-containing protein 1

GO:

id name namespace
GO:0031047 gene silencing by RNA biological_process
GO:0016442 RISC complex cellular_component
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012838 True 1581 mRNA 0.51 18 9883124 10314250

Neighbor

gene id symbol gene type direction distance location
AMCG00012836 snd1,LOC107738807 coding upstream 112453 9751636 ~ 9770671 (+)
AMCG00012835 NA coding upstream 159194 9702270 ~ 9723930 (+)
AMCG00012834 NA coding upstream 191785 9634234 ~ 9691339 (+)
AMCG00012833 NA coding upstream 413876 9412326 ~ 9469248 (+)
AMCG00012832 NA coding upstream 500623 9375167 ~ 9382501 (+)
AMCG00012839 NA coding downstream 95077 10409327 ~ 10410281 (+)
AMCG00012843 NA coding downstream 157615 10471865 ~ 10492477 (+)
AMCG00012844 NA coding downstream 217729 10531979 ~ 10534605 (+)
AMCG00012850 calua,LOC108432523 coding downstream 232301 10546551 ~ 10550066 (+)
AMCG00012849 tnpo3,LOC106609131 coding downstream 275948 10590198 ~ 10608349 (+)
G40146 NA non-coding upstream 408904 9473973 ~ 9474220 (+)
G40145 NA non-coding upstream 409256 9473545 ~ 9473868 (+)
G40121 NA non-coding upstream 588482 9294331 ~ 9294642 (+)
G40119 NA non-coding upstream 618031 9264878 ~ 9265093 (+)
G40041 NA non-coding upstream 789278 9091314 ~ 9093846 (+)
G40214 NA non-coding downstream 60781 10375031 ~ 10424371 (+)
G40303 NA non-coding downstream 426182 10740432 ~ 10743104 (+)
G40436 NA non-coding downstream 789575 11103825 ~ 11159087 (+)
G40496 LOC103376870 non-coding downstream 979967 11294217 ~ 11354359 (+)
G40498 NA non-coding downstream 1090755 11405005 ~ 11405356 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 752913 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 797424 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 1313233 8536233 ~ 8569891 (+)
AMCG00012797 NA other upstream 1537269 8335898 ~ 8345855 (+)
G39709 LOC101154678 other upstream 2046910 7835346 ~ 7836214 (+)
G40224 NA other downstream 122657 10436907 ~ 10444447 (+)
AMCG00012848 NA other downstream 226478 10540728 ~ 10541960 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 2138989 12453239 ~ 12500402 (+)
G40629 NA other downstream 2174325 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 4114063 14428313 ~ 14433201 (+)

Expression


Co-expression Network