AMCG00012841


Basic Information

Item Value
gene id AMCG00012841
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10444091 ~ 10489781 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012841
ATGGAGAGGAGCAGGAAGACGATCCCGAACGCTGAGagagggagagagagagatggagaggggggagggggcaggcgCAGACTGCAGAAGCTGTGTAACATGCTCAGCATCCATGAAAAGaTGTGCACCACGGTGGCCGACAGTGATTTCGACCACTTTGAGACCAAGGAAAGAGTCGGAAGGGTTTTTTTCCCTCGACTGCAGGGACTGTTCCAGGGAGTCAGTCTCCTGTATTTTAGGGTCTTCAAGAAGTATACTGTCGATTACTACAATGACAGCATCAATGTCTTCTGGAACACACCTGTCAAAGCCCCAGCGCTGTTCTTCTTCTGTGACAATGATCCACTCAGTGACAGTGAAGAGGTAGAGAAACTGACTGGGCACTGGCAGACACAGGGCATCAGTGTGGGGAAGAAGCGCTGGAAGGAGTCCATTCATGCTGGCCATCTAAGGGAGCACCCTGAAGACTACCTGACGACACTACATAACTTTGTACAGTCTCTCAACCTTTTTGgtttaaaagcaacattttga

Function

GO:

id name namespace
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG:

id description
ko04020 Calcium signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012841 True 534 mRNA 0.50 4 10444091 10489781

Neighbor

gene id symbol gene type direction distance location
AMCG00012842 NA coding downstream 2545 10437321 ~ 10441546 (-)
AMCG00012840 NA coding downstream 7541 10423377 ~ 10436550 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding downstream 561321 9880836 ~ 9882770 (-)
AMCG00012831 NA coding downstream 1193168 9171266 ~ 9250923 (-)
AMCG00012830 NA coding downstream 1273116 9152556 ~ 9170975 (-)
AMCG00012845 impdh1,LOC108442450,LOC107559456,LOC107665545,LOC106561215,LOC107710381 coding upstream 3581 10493362 ~ 10525888 (-)
AMCG00012847 NA coding upstream 62644 10552425 ~ 10556698 (-)
AMCG00012846 NA coding upstream 77650 10567431 ~ 10574509 (-)
AMCG00012851 NA coding upstream 122828 10612609 ~ 10626275 (-)
AMCG00012854 NA coding upstream 140245 10630026 ~ 10630954 (-)
G40206 LOC101154678 non-coding downstream 218134 10225694 ~ 10225957 (-)
G40172 NA non-coding downstream 753180 9686810 ~ 9690911 (-)
G40115 NA non-coding downstream 1186640 9236900 ~ 9257451 (-)
G40039 NA non-coding downstream 1358298 9083660 ~ 9085793 (-)
G40008 NA non-coding downstream 1542610 8900113 ~ 8901481 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding upstream 59876 10549657 ~ 10551377 (-)
G40323 NA non-coding upstream 238714 10728495 ~ 10728820 (-)
G40325 NA non-coding upstream 248201 10737982 ~ 10738597 (-)
G40326 NA non-coding upstream 249304 10739085 ~ 10739378 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding upstream 250114 10739895 ~ 10740301 (-)
AMCG00012829 NA other downstream 1291686 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 2539636 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 3748167 6638480 ~ 6695924 (-)
G39487 NA other downstream 3987913 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 4380274 6052364 ~ 6063817 (-)
AMCG00012858 NA other upstream 250573 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 368100 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1750615 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 2406739 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 2625112 13114893 ~ 13115487 (-)

Expression


Co-expression Network