AMCG00012846


Basic Information

Item Value
gene id AMCG00012846
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10567431 ~ 10574509 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012846
ATGTCGGGGACTGACAATTTCTACCTCTTCGAAAACATCTCCTCTGTGGGGCCTTTTGAAGGACCCCAGTACCACATTGCCCCAACATGGGCTTTCTACTTCCAGACAGCATTTATGGGTTGTGTCTTTGTTATTGGCGCCCCTTTAAATGCTGTTGTGCTCGTAGtaacaatcaaatacaaaaagctGCGGCAGCCACTTAATTACATTCTGGTTAATATTTCTGCAGCTGGGTTTGTAGCAgtaatgttttcaatatttccAGTGTTTTTATCAAGTTCACAAGGATACTTCTTTATGGGAAAGACAGCATGTGCTTTTGAAGGATATACAGGAGCCATAGCAGGGTTGGTGATGGGATGGTCTCTCGCTTTCCTTGCCTTTGAAAGATATATTGTCATCTGCAAACCCATTGGAAACTTCCGTTTTGGCTCCAAACAAGCTTTGATTGCTGTAGCGGCCAGCTGGATAATTGGAATTGGTATTGCATCACCACCATGGTTTGGCTGGAGCAGATTCATCCCTGAAGGCCTGCAGTGCTCCTGTGGCCCAGACTGGTACACAACAGGCACCAAGTACAACAGCGAGAGCTACACCTACTTCCTCTTCATTTGCTGCTTCTGCTGCCCCTTGACTCTCATCATCTTCTCCTACTCGCAGATTCTAACAACCCTCAGAGCGGTGGCAGCCCAGCAGGCAGAGTCAGCTACTACCCAGAAGGCCGAGCGGGATGTCTCCAGGATGGTTGTGGTCATGGTGGGCTCCTTCCTGCTCTGCTATGGCCCCTATGCTGCATTAGCCATGTATATGGTCAACGTCAGGAATGGACTGAAAGACCTCCGAATAGTCACCATCCCGGCCATGTTCACAAAGAGCTCCTGCATCTACAACCCCCTAATCTACTCCTTCATGAACAAACAGTTCCATGCGTGCATTATGGAGACTGTGTGTGGGAAGACCATTACGGATGATTCTGAAGTATCCAGTTCGAGTAAAACTGAGGTGTCGTCCGTCTCTTCCAGTCAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04252 OPN1SW; short wavelength-sensitive opsin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012846 True 1026 mRNA 0.48 5 10567431 10574509

Neighbor

gene id symbol gene type direction distance location
AMCG00012847 NA coding downstream 10733 10552425 ~ 10556698 (-)
AMCG00012845 impdh1,LOC108442450,LOC107559456,LOC107665545,LOC106561215,LOC107710381 coding downstream 41543 10493362 ~ 10525888 (-)
AMCG00012841 NA coding downstream 77650 10444091 ~ 10489781 (-)
AMCG00012842 NA coding downstream 125885 10437321 ~ 10441546 (-)
AMCG00012840 NA coding downstream 130881 10423377 ~ 10436550 (-)
AMCG00012851 NA coding upstream 38100 10612609 ~ 10626275 (-)
AMCG00012854 NA coding upstream 55517 10630026 ~ 10630954 (-)
AMCG00012853 NA coding upstream 67209 10641718 ~ 10644387 (-)
AMCG00012852 NA coding upstream 69881 10644390 ~ 10656133 (-)
AMCG00012857 atp6v1f,LOC101079638,LOC101164034,LOC104938441 coding upstream 245750 10820259 ~ 10822853 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 16054 10549657 ~ 10551377 (-)
G40206 LOC101154678 non-coding downstream 341474 10225694 ~ 10225957 (-)
G40172 NA non-coding downstream 876520 9686810 ~ 9690911 (-)
G40115 NA non-coding downstream 1309980 9236900 ~ 9257451 (-)
G40039 NA non-coding downstream 1481638 9083660 ~ 9085793 (-)
G40323 NA non-coding upstream 153986 10728495 ~ 10728820 (-)
G40325 NA non-coding upstream 163473 10737982 ~ 10738597 (-)
G40326 NA non-coding upstream 164576 10739085 ~ 10739378 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding upstream 165386 10739895 ~ 10740301 (-)
G40584 NA non-coding upstream 1662720 12237229 ~ 12239457 (-)
AMCG00012829 NA other downstream 1415026 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 2662976 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 3871507 6638480 ~ 6695924 (-)
G39487 NA other downstream 4111253 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 4503614 6052364 ~ 6063817 (-)
AMCG00012858 NA other upstream 165845 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 283372 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1665887 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 2322011 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 2540384 13114893 ~ 13115487 (-)

Expression


Co-expression Network