AMCG00012847


Basic Information

Item Value
gene id AMCG00012847
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10552425 ~ 10556698 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012847
ATGGCAGGGACTGAAGAATTCTACCTCTTCAAAAATATCTCTTCTGTGGGGCCCTGGGATGGACCCCAGTACCACATTGCCCCAAAATGGGCTTTCTACTTGCAGACTATATTCATGGGTATGGTTTTTCTTTCAGGCACCCCTTTAAATGCTGTTGTGCTCATAGTAACCATCAAATATAAGAAGCTACGACAGCCACTTAATTACATATTGGTAAATATATCGGCGGctggctttatttttgtttccttttcagtgtttactgtatttttatcaaGTGCACAAGGTTACTTCTTCTTTGGGAAGACAGTGTGTGCTGTGGAGGCTTACCTGGGATCAATAGCAGGGCTGGTGACGGGATGGTCTCTGGCTTTCCTTGCCTTTGAAAGATATGTAGTCATCTGTAAACCGCTTGGAGGTTTTCGTTTTGCTTCTAAACATGCACTGCTTCTGGGAGCCCTTAGAGCGGTGGCAGCCCAGCAATCAGAGTCAGCTACTACCCAGAAGGCCGAGCGGGACGTTTCCAAGATGGTGGTGGTCATGGTGGGCTCCTTCCTGGTCTGTTATGGCCCCTACGCTGCATTAGCCATGTATATGGTCCATGTGAAAGATGGAATGGATCTCAGATTAGTCACCATCCCTGCTCTGTTTTCTAAGAGCTCGTGTGTCTACAACCCCCTCATCTACGCATTTATGAATAAGCAGTTCCGAGGTTGCATCATGGAGACCGTGTTTGGGAAACCTATTACAGACGAATCTGACGTGTCCAGCGCCAATAAAACAGAGGTGTCATCTGTGTCCGCAAGCCAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012847 True 810 mRNA 0.47 5 10552425 10556698

Neighbor

gene id symbol gene type direction distance location
AMCG00012845 impdh1,LOC108442450,LOC107559456,LOC107665545,LOC106561215,LOC107710381 coding downstream 26537 10493362 ~ 10525888 (-)
AMCG00012841 NA coding downstream 62644 10444091 ~ 10489781 (-)
AMCG00012842 NA coding downstream 110879 10437321 ~ 10441546 (-)
AMCG00012840 NA coding downstream 115875 10423377 ~ 10436550 (-)
AMCG00012837 LOC108442864,LOC103033525,LOC108263937,LOC107594935,LOC107738417,LOC107559378,LOC107672593 coding downstream 669655 9880836 ~ 9882770 (-)
AMCG00012846 NA coding upstream 10733 10567431 ~ 10574509 (-)
AMCG00012851 NA coding upstream 55911 10612609 ~ 10626275 (-)
AMCG00012854 NA coding upstream 73328 10630026 ~ 10630954 (-)
AMCG00012853 NA coding upstream 85020 10641718 ~ 10644387 (-)
AMCG00012852 NA coding upstream 87692 10644390 ~ 10656133 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 1048 10549657 ~ 10551377 (-)
G40206 LOC101154678 non-coding downstream 326468 10225694 ~ 10225957 (-)
G40172 NA non-coding downstream 861514 9686810 ~ 9690911 (-)
G40115 NA non-coding downstream 1294974 9236900 ~ 9257451 (-)
G40039 NA non-coding downstream 1466632 9083660 ~ 9085793 (-)
G40323 NA non-coding upstream 171797 10728495 ~ 10728820 (-)
G40325 NA non-coding upstream 181284 10737982 ~ 10738597 (-)
G40326 NA non-coding upstream 182387 10739085 ~ 10739378 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding upstream 183197 10739895 ~ 10740301 (-)
G40584 NA non-coding upstream 1680531 12237229 ~ 12239457 (-)
AMCG00012829 NA other downstream 1400020 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 2647970 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 3856501 6638480 ~ 6695924 (-)
G39487 NA other downstream 4096247 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 4488608 6052364 ~ 6063817 (-)
AMCG00012858 NA other upstream 183656 10740354 ~ 10753698 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 301183 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1683698 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 2339822 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 2558195 13114893 ~ 13115487 (-)

Expression


Co-expression Network