AMCG00012857 (atp6v1f,LOC101079638,LOC101164034,LOC104938441)


Basic Information

Item Value
gene id AMCG00012857
gene name atp6v1f,LOC101079638,LOC101164034,LOC104938441
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10820259 ~ 10822853 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012857
TGTCCGGATACGGAAGCAGTGCTGTTTGTCAGCTGATCAAGTGAGTTCAATTTTCTGCAAGTAGTCTGCTAACCCGAAACAGAAATAGCTTAAAACACTAGATAGAGCAGCACTTGAGAGAGGATCGTCTCCGTCCACAATGGCAGGCCGAGGGAAGCTGATCGCGGTGATCGGAGACGAGGACACCTGCACGGGGTTCCTGCTCGGCGGGATCGGGGAGCTCAATAAGAACCGCAAACCCAATTTTCTGGTGGTTGAAAAGGACACCAGCATTACCGAGATAGAGGAGACCTTCAAGAGTTTCTTGGCTCGTGATGACATTGGGATCATCCTGATTAACCAGTTCATCGCGGAAATGATCCGCCATGCTATAGATGCCCACTTGCAGTCCATACCTGCTGTGCTTGAGATCCCATCTAAGGAGCATCCCTACGATGCCTCTAAGGACTCCATTTTGCGAAGGGCCAAAGGCATGTTCAGCGCTGAAGACTTCCGCTAAACGCCAAAGGAAGATGGCAGGCAGGGCAGCTATTGTGATCTGGTTGCTGCTAAGAGCATAGAAAGTTATCCCTCAGTCACTGTTAcgttattttcaaaactgcattCCATGGCAGAAAACCCTTTATCTTCAAATGATAAATGATTTGactgttttaaaacttaattactttggtgctgtgtttttttttgtttgtttgttttttagtttttttacttcCATTTGACATCAcagttgaaaatgaataataactCCAAGTGTTTTTCCtactattttctgtttttagtttttgacaGATGACGATGTTATGATTGACAACCAGTAATAAAAAGAGCTGCATCTTTAGACCTTAGTGATACGTCAAATGACAGATTTGTTAGCTTTTGAATTAGATTTAAACTAGATGTCTTTTAGCTCCTCCCTCTCCTTGGAAAGACAGGCAGCACTCGCCCAATGTCATTTAAGATTtctagggctagaccaaataaaaacttagATTTTAATTCATTCTAGGCTACCACACCACCATGAGTCACTGTTTTAAAAGTGTCATGAGGGGGGTTTCTGTGgcctaaattaaatcaaaatggaaaaataaaatgtacgccatcatgattaattttatttcaatcaCAGGACCAGATATATATGTAGgatgatatttttaaaatgtacgtAAGCAATGGTAGGGAAGGAGTTAGTACTGAAATGGAAATTTgtagttaaaatataaatggtttaataaacCATAGGAGGCACAAATGTACCACACCCAATGCAATGTGATGGAAAAGGTGGTCTCTGACTGAGAAGTTAAAGAGTGAAAAGGGGATTTAATCTATTATTTTATACTGGaggcttttgaaaaaaacatcttaaaaactACATTGCCGAAGCTGCGTCCATTGGTAAGGGCTGCCTGCCTTAGATGTTGTAGAATAAATGGTAAATATATTAACTTATTCGTTCAAAATGAGACTGATGTTGAGAATATATTGATGTTCGTTTAATATGCCGTGTGTGAGTGTATTGTCACCATCTATGGAATCTCtataaaaatctaaagaaagCTTGTTGTCTCCAATGATTTTCTATGGATTTTAAAGGCTAcacaattgaaatacatttgacattacATTATCTGTTGCATATTTgccaaaacattgttttcttaatactAAGAAAGGTTAGTGTGGACATTTACAAAATTATgccaatatttaaattaataatcc

Function

symbol description
atp6v1f Predicted to enable proton-transporting ATPase activity, rotational mechanism. Acts upstream of or within several processes, including Kupffer's vesicle development; notochord cell vacuolation; and regulation of heart looping. Located in plasma membrane. Is expressed in central nervous system; diencephalon; epiphysis; mucus secreting cell; and telencephalon. Orthologous to human ATP6V1F (ATPase H+ transporting V1 subunit F).

NR:

description
PREDICTED: V-type proton ATPase subunit F isoform X1

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0060036 notochord cell vacuolation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02151 ATPeV1F, ATP6S14; V-type H+-transporting ATPase subunit F

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012857 True 1734 mRNA 0.38 2 10820259 10822853

Neighbor

gene id symbol gene type direction distance location
AMCG00012852 NA coding downstream 164126 10644390 ~ 10656133 (-)
AMCG00012853 NA coding downstream 175872 10641718 ~ 10644387 (-)
AMCG00012854 NA coding downstream 189305 10630026 ~ 10630954 (-)
AMCG00012851 NA coding downstream 193984 10612609 ~ 10626275 (-)
AMCG00012846 NA coding downstream 245750 10567431 ~ 10574509 (-)
AMCG00012861 NA coding upstream 119987 10942840 ~ 10979099 (-)
AMCG00012867 st7,LOC106573121,LOC106530896 coding upstream 185080 11007933 ~ 11030339 (-)
AMCG00012868 capza2 coding upstream 244297 11067150 ~ 11084825 (-)
AMCG00012869 NA coding upstream 273632 11096485 ~ 11120770 (-)
AMCG00012875 cav1,LOC106561554,LOC107574005,LOC107574842,LOC107679630 coding upstream 325439 11148292 ~ 11161963 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 79958 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 80881 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 81662 10737982 ~ 10738597 (-)
G40323 NA non-coding downstream 91439 10728495 ~ 10728820 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 268882 10549657 ~ 10551377 (-)
G40584 NA non-coding upstream 1414376 12237229 ~ 12239457 (-)
G40684 NA non-coding upstream 1760658 12583511 ~ 12583719 (-)
G40735 NA non-coding upstream 1918322 12741175 ~ 12742696 (-)
G40747 NA non-coding upstream 2084594 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 2646452 13469305 ~ 13558179 (-)
AMCG00012858 NA other downstream 66561 10740354 ~ 10753698 (-)
AMCG00012829 NA other downstream 1667854 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 2915804 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 4124335 6638480 ~ 6695924 (-)
G39487 NA other downstream 4364081 6455721 ~ 6456178 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 35028 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1417543 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 2073667 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 2292040 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 3517563 14340416 ~ 14344472 (-)

Expression


Co-expression Network