AMCG00012858


Basic Information

Item Value
gene id AMCG00012858
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10740354 ~ 10753698 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012858
ATGGTCAACGTGACACCAAATGTAACCGTGGAGAAGGAAGATGTTGAGTACAACTATCTGGCCCTCGTGTTTGGAATTACACTCATCCTGATAATCATCTTAGGAAACGTTCTGGTTTGCCTGAGTGTCCTAACAGAACGGTCTCTGAAAACAGCCACCAACTACTTCATTGTTAGCTTGGCTGTGGCAGACCTGCTCCTGGCAGTTCTGGTCCTCCCACTGTATGTGTATTCAGAGTTTCTGGGGGGTGTATGGACTCTAAACACCTATATCTGTGACGCACTGATGACCATGGATGTAATGCTATGTACTGCCTCCATTCTGAACCTATGTGCAATCAGTGTTGATAGGAATCAGTTCAGTATGCGCCAACTGATCTTAATCACAGCCACCTGGGTCCTGTCCTTTGGGGTTGCCAGCCCGGTCATATTTGGCCTCAACCAGGTCCCCAACCGAGATGAGCACGTCTGCAAGCTGGAGGACGACAACTTCGTGGTGTACTCCTCTGTGTGCTCTTTCTTTGTGCCTTGCCCCGTCATGCTGCTGCTTTACTACTGGATGTTCCGCGGCTTGAAGAAGTGGAGCGCCAACCGGAAGTCGAACTTGATGAGGGGGGAGCGGCGGTTTTCGCTCAGCTTGAAGGGCCTTCGGCGGGAGCGGAGAGAGAAGGTGAAATACCTGATGCCCGGCCTCAGCCCCACCGCTGCCAATCAGAGCACCCTGCAGGAGAACGAACTGATAACCACCCAGCTGGACAGCACTTCGGACGCCGAGGCACAAGAAAGGCCGAAGGAAGGCAGTCTCAAGGAGAATGGCCTGCGAAACAACGGCTCGGGAAAAGGATTCCAGAGCAAGAGCCACCGAGTCAGCGGCAGGGAACGGAAAGCCATGAAAGTCCTGCCCATCGTCGTAGGGGTGTTTCTGGCCTGCtggacaccattctttgtaGTCCATGTTACCAAGGTCCTGTGTGTATCCTGTGACATCGGGCCGACGTTAATCAGTATCGTGACATGGTTGGGGTATGTGAACAGCGCTGTAAATCCTATCATCTACACAGCCTTCAACACAGAATTTAGGAATGTCTTTCAGAAACTcttttaa
>TU50262
aaaaaaagtgtAGGAAAAGGAATTGAgactgtttatgtattttaaactttatttatctAGTGaggtacaaaaaatatacaaagtataaaaaaataaatacacaaatgaaaaaagtaatatatttacgaacaataataataataataataataataataatacaaacaatcacAGTTACACCCAGTAACAAGTATAAATCAGGTCAACAACATCATTTGAAATAGACTTAAAGATATCaagtggttgttgttgttttatttcagatatGAAGCTATGTTTTCACaccttttaaacatttatctttGCTGATGACAGCTATAAcctaaatatgtaaaacaataaataatttggaATGGCATCTTATTGAGAAGGTCACTGAATTGCAGACTcgtaacatttaattttgtacacTGCACTTACATTTTATGGTACCACTGAGACAATGCTATTAAAAGTCTACTCAATGACAATCACTCTAGGtgatgtaaaaagaaaaaacaaacaacaaaaaaaactgttattcAAGTAGAGTCTCATTATTTGACAGTTATGGTCATATTGACACTTTTCtctcaattaaaaacaacaactttatttaccatgagaaaattaaaaataatagtttttattcTATTTCTGAAACTGCTGTACTAACCATTTGTTTCATCCTGTCAAATATCTCTCCTTATTTGACCTAATTTCTGCctagtatttaaaatgtgtattgtttggAAATGAAAGTGTTTGCAGGAATATGgatcttttcattttgtctttacattacagtatattctttagattattttgaaagcaaagattacataattaaaatagtgcttaattttaaactaagcaatttataattttataataaaactaGGCTCTTTTTTCTCagcttttaatattaaattgtagGGAACAAAATACTTTGTTAATAAATGCAAGcacacattcattattattattattagattatagactgacaacaaaacaacaacaacaacaacaacaataataataataataataataataataataataataataataataatctagtgaatttttaaacatattctgATCAAAACATGACCAATGTATAAAAACTGGGCTACCAAAGTCAAAAGCAGAGGTCAATCACATAAAGCAGGAACTTTATGTGGAACAGGGAACTGCAGTTAATCACTCCAATTTCTGTGGAATActgtttttttcagtgtttttattcggtgtacagtgtttattatttataatgaatgtgtccataaatacatattcacaaAAAATCTGTGAAATCTGATatgcttaattgttttaaaaccagATTGTATTCATTATCTAAATTAACACGGAGCCAACGAAGAAATCccttactaaaacaaaacaaaaatatcagaATAACCCTACTAAATGTATAATACTTTATAATGCTCATGGTTATTTTATGCATAGTATGACAAATGTAAGTAGACatgcttaaaatacaaaaaaagcttttcttacAGTTTGAACAGACACtacatagatatatagatagataattaAAGGACAATGTTTCTTTCcttgtgcatttttattaaaatgcagaaacaaaacttTCTGAAAATAGAGATCACATTATGtgctataaaatacaaaacgtTTAAGTCATCCAGTGAATcattaattacagtaaattCTGTCTTAAGgcagaaaacataaaaagacaTTGCCAGGagataaagtatatatatatacacacacattactctGCAGCTGGAGTGTGTACCTGTTCAATAAACTCTGCTCCAACAACAGCATTAAAAGCAGATCTTTGAAATTTAGAAACTTATTGGTGccacaaaaagtaaaataaaccaaatgaaaataagataaaacaaTGGGCAAGTATATCATTGTAACTATATAATAACCCAAAGATAATGCCAATCACTTCTGTCAGCAATCACTTCAGTTTGTATGAGACAAGTATATCATTAGAAGGATACACAcgtacttaatttattttatgataatgAAATCAGGATCTAGTGAAAATGGGAGTAAAGGTGTGTGATTTAATGAGATGTTCTTGAGAATTAAAGCAAACACTTGTGTTTTTGCGCAATATTTTAATACCAGAcagaacgtgtgtgtgtgtgtgttttattggattcatatattaatataataatacaattacccAATTTGTCCCCTTTATGTGGTACCAATACATTTCTGTCATTTACTTAAAATTCTCTAAATTGAAAAAGCACCTAGGGGGTTGCATTTATCACCCCACATTTATTCAGCTGGTGCCTGTTTAACAGTGACAGTCATAGGCACAATACATCTCAAAGTGGTGTATGTAGGTTATAAGCAGGCTTgccactatttatttttatctctttTAATCCATGCTTAATGGAGAAGTTACCGTTACTCAAACAATTTTCCTGTGCCCTATTTAAGAGAGAATATGTATTGGATTGGATTCCACCAGTTCACTCTTAACCTCACCCCCAACTGCATTCTGTCCAACTATTTACCATCCAGCTTGGCATAATCTGTGAAGACATGGTGTTTTAGTAGAATTTacctttaatttgatattttgcaAGTCTCTGTGTCGCTTTTCTAACCTTGTTATGCTTCCCATATCAGTCAGAATAGGATAAAATGACAGTGTACAAAAGGACCACTCAGACAGAGACCCCAGTCATTTAGAGCAGAACAGGGACACAACAGTACTTATAAATGTTATACTAACTACAGAACAtttcttcattattaatttttgGTACTAAGAAAATAGTGAGTTTTGTTGTTAACCAACTGTATCCTAGgtaaattatttcatatatatatatatata

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012858 False 1104 mRNA 0.52 5 10742330 10753698
TU50262 True 2857 lncRNA 0.29 2 10740354 10743231

Neighbor

gene id symbol gene type direction distance location
AMCG00012852 NA coding downstream 84221 10644390 ~ 10656133 (-)
AMCG00012853 NA coding downstream 95967 10641718 ~ 10644387 (-)
AMCG00012854 NA coding downstream 109400 10630026 ~ 10630954 (-)
AMCG00012851 NA coding downstream 114079 10612609 ~ 10626275 (-)
AMCG00012846 NA coding downstream 165845 10567431 ~ 10574509 (-)
AMCG00012857 atp6v1f,LOC101079638,LOC101164034,LOC104938441 coding upstream 66561 10820259 ~ 10822853 (-)
AMCG00012861 NA coding upstream 189142 10942840 ~ 10979099 (-)
AMCG00012867 st7,LOC106573121,LOC106530896 coding upstream 254235 11007933 ~ 11030339 (-)
AMCG00012868 capza2 coding upstream 313452 11067150 ~ 11084825 (-)
AMCG00012869 NA coding upstream 342787 11096485 ~ 11120770 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 53 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 976 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 1757 10737982 ~ 10738597 (-)
G40323 NA non-coding downstream 11534 10728495 ~ 10728820 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 188977 10549657 ~ 10551377 (-)
G40584 NA non-coding upstream 1483531 12237229 ~ 12239457 (-)
G40684 NA non-coding upstream 1829813 12583511 ~ 12583719 (-)
G40735 NA non-coding upstream 1987477 12741175 ~ 12742696 (-)
G40747 NA non-coding upstream 2153749 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 2715607 13469305 ~ 13558179 (-)
AMCG00012829 NA other downstream 1587949 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 2835899 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 4044430 6638480 ~ 6695924 (-)
G39487 NA other downstream 4284176 6455721 ~ 6456178 (-)
AMCG00012732 NA other downstream 4676537 6052364 ~ 6063817 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other upstream 104183 10857881 ~ 10862322 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1486698 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 2142822 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 2361195 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 3586718 14340416 ~ 14344472 (-)

Expression


Co-expression Network