AMCG00012862 (cttnbp2,LOC102784586,LOC102201476)


Basic Information

Item Value
gene id AMCG00012862
gene name cttnbp2,LOC102784586,LOC102201476
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10874552 ~ 10882625 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012862
AGTGTAGGTCCCACATTAGCATGCATGCACCCCTCTACgttttgttacaaaaataacaggTGCACCGCTTTTATGCAAGTGGCTGTGAGATATTacttctaaatattttaaagtcttTACACTTAAAAAGCCCAAAGCTGCACATCGTGACCGTACTGGGCGAGCAAGGCAAGGTGCCAGTTCAAACCGCACATCTGGGTTGCAATCGGGCGACGCCgtggattttattaatttcgTGTGATACCAAATCCGCAGGCGAGAAAGCCAGGGGGAGATGTCTCCAACACGGAGCACGGAGGCCAAGAGCAACTACGCTATTCAATCGCATCCAGAGGTCGTAATTTCGTGTTGTAATTCACGTTCAGCCACGCAAGAGTTAAAGCGGCACCGAGCGCGTTGTTGTGCGCTGTGAGCTGCTCCCGCCGCCAGACCGCTACAGTAGGAAGATGGCGACGGAGGGTGCAACCGGGGAACAGCCTCCTCCGATCCAAACATTAACAACTGCACTGCCTGGAAGCATCGACACGaAATGTGAGTTTAACATGGATAATCTCAGCAAACCTGAGCTTCTCACACTTCTCAGTATTATGGAGGGGGAATTAGAAGCCAGGGACTTGGTGATCGAGGCTTTGCGGCTTTTCCAAGTAAtgtttccagatgcactgtttGACCTCAAATATTGGATCAGTGAAGAGCTTTCTGTTAAGCTTGTGCTGAGGCTGAAAATGAAACGTCCCTTTCAGAATCTTCCAAATCTAATCAAAGGAACCCCAGTTAAAAATCAGacgcattatttattttgaagtctaGGAGTTTTCACAGGATGCGGCCAGTAGAactttgttaaaacattttttcctgtttgttccAAGACCATGGATGAATTTGTGTTAAAGCAGATTAGAGGTATTTACTGTAGCAATAGGGCtgaatattaaatgtttctaaTGTGTGCTGTAATGTGGATTGCAATAAGATTCCATGATGTAACACGTTGAGCCTTTGTGGATTTTTACAAACCGTGGGCTCTTTGATACGGCATAAGCCTGCTCCAGATGTTGTCTGTTTCATGTGTTTGATCTTGTTTCGAGTAAATCTGCAGTCAGGGACAATTTGGagctcagaaaaataaaaacaaatgtaaatgtatatttgtttttctgctttatcATTGCAGTTTGTGGAAGGGTCTGCAGCTGTTAATAGCTGAAAGGGACCAATTTGTCATTGTGTGTTAAGCATcacttttttgtatgtatttgtttgtcatATATGTCTGCATGGATGcaataaacatgcaaaacatgtaaaatagcAGAGTGGTTGTATTCCTAACATTATAACAGATGCAGTTAAGTCCTTATTAAAAGttgcatgaaaacaaataaatg

Function

symbol description
cttnbp2 Predicted to be located in cell cortex and dendritic spine. Is expressed in anterior macula. Orthologous to human CTTNBP2 (cortactin binding protein 2).

NR:

description
PREDICTED: cortactin-binding protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012862 True 1391 mRNA 0.42 3 10874552 10882625

Neighbor

gene id symbol gene type direction distance location
AMCG00012866 NA coding upstream 12252 10825020 ~ 10862300 (+)
AMCG00012855 NA coding upstream 134431 10699041 ~ 10740121 (+)
AMCG00012860 NA coding upstream 184748 10686553 ~ 10689804 (+)
AMCG00012859 NA coding upstream 189377 10666760 ~ 10685175 (+)
AMCG00012849 tnpo3,LOC106609131 coding upstream 266203 10590198 ~ 10608349 (+)
AMCG00012863 NA coding downstream 30667 10913292 ~ 10947270 (+)
AMCG00012865 NA coding downstream 96258 10978883 ~ 10998312 (+)
AMCG00012864 NA coding downstream 117576 11000201 ~ 11006579 (+)
AMCG00012871 NA coding downstream 329397 11212022 ~ 11232862 (+)
AMCG00012870 mest coding downstream 360800 11243425 ~ 11248941 (+)
G40303 NA non-coding upstream 131448 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 450181 10375031 ~ 10424371 (+)
G40203 NA non-coding upstream 702089 10172254 ~ 10172463 (+)
G40146 NA non-coding upstream 1400332 9473973 ~ 9474220 (+)
G40145 NA non-coding upstream 1400684 9473545 ~ 9473868 (+)
G40436 NA non-coding downstream 221200 11103825 ~ 11159087 (+)
G40496 LOC103376870 non-coding downstream 411592 11294217 ~ 11354359 (+)
G40498 NA non-coding downstream 522380 11405005 ~ 11405356 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 583596 11466221 ~ 11468218 (+)
G40555 NA non-coding downstream 861971 11744596 ~ 11744795 (+)
AMCG00012848 NA other upstream 332592 10540728 ~ 10541960 (+)
G40224 NA other upstream 430105 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 1744341 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 1788852 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2304661 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 1570614 12453239 ~ 12500402 (+)
G40629 NA other downstream 1605950 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 3545688 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3634158 14516783 ~ 14529806 (+)
G41059 NA other downstream 3749732 14632357 ~ 14633413 (+)

Expression


Co-expression Network