AMCG00012863


Basic Information

Item Value
gene id AMCG00012863
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 10913292 ~ 10947270 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012863
ATCATGCATACCACCTAATAAATCCCCCCTTCCACAGATAGAGCATTGTTCTCTGATGATGTACATGAAAATAACGCAGTGTCGTTTCTTTTGCAGGCCCGTAGGAAAGATGTGTTTATTCAGGAGCGATACGGGCGGTTCAGCCTCACTGACCCCTTCCTGGCTCTGCAGCGCGACTACGAGTCtgggggaggagagaaggagaagagagCCATGTGCACCAGCCCCCTCTCTATCCTGGAGGCAGTTATGGCCCATTGCAGGAAGATGCAGGAGAAAATGTCTGCACAGCTGGCAGCCGCCGAAAGCAGGCAGAAAAAGCTGGCTGCCCGGGTCGTGGAGGAGAGTCAGAAGTTTGACGAACTGTCGGCCAAACTGGAAGAGGAAGCCAAGGCAACAGGGCGTCTGGAGGAGGAGCTAACAGTGGAGAAGCAGAAAGGGCAGCAGATGGAGGCCAAGATGGAGAAGCAGCTCTCCGATTTCGACACGGAGCGCGAGCAGTTACGGGCAAAGCTGAGTCGCGAGGAAGCCAGGGCCACCGACCTGAAACTCGAAAGCAGCGATCTGAGGAAGCAGGTGGAACAGCTCCGAACTGCAAAGGAAGCCCAGCAGACTGCTCCTTCGAGCACCGCAGTCAAAACCAGGGCTTCTGTGTCCATTGGTGTGGGAACGGATGTGGTAAACTTGCGGATGGCCTCCTGTCAGACTGACGCATTGCCTACCGCAGAGCACGGTGTTGACGGGGTGAAGAAGTCTCCCCTCACGATACCGGTGAAACCTCCTGCTGCCAATTACAGCAGCTTCGGCCTCCCGAAAGCAGGAGTGGTGGTCAATGCTAGACCTGTTGCTGATCGGGGGATGTCCCATAGCTGTTCAGCACTTCTTCCTGGTTCTTCACAGACTGAAAACGGACCCTCGGGCGGTGACTCACTGCACCCTTCGGGAGTGGCTGCTGCCAGTTTTGTTTCGACACCCATGGGTCACAGTTTACATTCACCCGGTTCTGCTGCCACTTTGCCGACAGGCGTCAGCCCCAGGGTCCAGGCTGCCCGCAACAAGTTTCAGGCTTCCCCTACTGAGCATGACCAAAATGGAACCACCACACAGAGCCCCCCATCCAGAGATGTGTCGCCCACGAACCGAGACAACTTTGCTGCCAAACAGCAGGCCCGACACACCGTCACGCAGGTCCTTTCGAGGTTTACAAGTCCACAGACTGTGAACACCTTGAGGCCAGGTTTGCCCCACTCTGCCTCCGAAGGGGGGCCTTTCCCTGGGCGCATAGGCCACCCTCAAATTGGCCTAAAGTCACCCACTGTAAGCCGAATCGACAGGGGCAATCCTCCGCCCATCCCTCCCAAGAAGCCCGGCCTCTCGCAAACTCCTTCCCCTCCACACCCATCCATAAAGGTGTTAGGTGATGGCAGCAGGTCCCCCAGCACTGGGCTAGGTCTTCCCTCCAAAGCATTGCCACCTCCTTCCAGTTCTCCTCCCGGGATCCGCCTAATAAACGAGGAGGTTCTGTCCAAACCCACAACACCACAGCTACCGCCCAAGCCGACCCTTGATATTGCAGGGGCAGGCACTGGCTGCCCTATCCCAGCCTTGGCCGCTTCTCAGGTGGGTGCCTGCCCCCCCGTCTCCAGGGGGCTGCACCAGTCCGCATGTACAGAGTGTCCCCATGTCATCCCTACCTCCACCACCGCCATTGCCTATAGCTCCTCCATAAACCCTGTTAGTGCTTCATCCTGTAGACCCTGTGACACAGACAGCCCACTGGCAACAGCCTCAGGCTGGTGTCCCTCCCTAGTCCCCTCGCTAACCTGTGGTGGTCCTGTCCCCCTGGCTGGCAGGCCCACCCTCCTCCTCGAAGCTGCTACCCAGGGAAATGTCACTTTATTGTCAATGCTGCTTAACCAAGATCCAATGGATATTAGTCACCTTGATGAAGATGGATATTCTGCCTTGTATTCTGCTGCTAAAAATGGACACACAGACTGTGTTAAGCTGCTGCTGACTACAGGGATGCCCGCTGATGTTCCTGATAAAAACGGATTTACACCTGTACACAACGCTGCTGCCAATGGTCATTTCAGGTGTATTGAACTATTAACTAGCTTTGGTGCTGATGTGAACCGTGCTACTGTGAGAGGACAGACCCCTCTGTATCTGGCCAGTGGTAGTGGGAGCCCCGAGTGTGTGAGACTACTGCTGGCCAAGGGAGCTGACCGCGCTGTGGTCACCAGGGACGGATGGACAGCACTCCATGCAGCTGTTGACTCAGGTCATGCTAGCTGCCTGGTGCTCCTCATGTATTATGATGCATCTGAAGATGGAGTGTCTGCCAGCGAACTGGAGAGGACTTTCGATCCCTCTGACTTCAGCTACATGGAGATCATCCGTACCTGGGGAAAGAGGCCTACGCTGCCTGGCAACCTGATCAACCACGCCAACACAGACGGCTGGACAGCTGCCCACATTGCTGCCTCCAAGGGATTTAAGAATTGCCTTGAGGTTTTGTGTAGCCACAGCAACCAAGACATTGAAAAAAGGGACAAATGCAACCGAACCGTCCATGATGTGGCTACAGATGACTGCAAAGATCTTTTAGAAAACCTGTATTCATACAAACTCCTTGTTAAGATCCACAAAAGCTCAGATGAGGAAATGTGCACAGTGGATATTGTTGAAGATGGACTCACTGTAGGGTTGACAACTGTCCGGAAGCACACTAGCTGGGATGACCTGTACAAAAGCTTGTCCCAGGTTCTTGTGAACCATTGTCACCTTCTCTCGAGTGGATGGGAAGAGAGGAACTCTGGCTTTAATGTTAGTGCCGGAGCTCCCATTGGCCTAAGTGTGAACAGCATCTTTTCAATCCAGATAGATGAGGCCACTTGGTATCCAGGTCAGACACTTGCTCAGACTCCATGGGAGGTGATAAGAAAGAGTCAATGTCAACATCTTACACTAAGACTGAAGGGCTTGTTGGAATCCTCTCTTGATGAGTTGACGTACGCATCTCTGATCCCCCTCCAGTTTCTCCAGAACTACATTCGGCTGGTGGAGCAATATCGTACAGTTATCTTTCATGGGCCAGAAGGAAGTTGCCAGGAATACCTAGCAAACCAGATTTCCCATTGCATAAAGCACAAACAAGAGGCGATGGGGATCGGCTGTGATATTGTAAAACTGGAAGTGGAGGCTGAGTTGTCAAAAGAACAGTTGGTGGAGTCGTTCATCAACTGTGGTTTCCTGGTCCCACTGAAGGAGCAGGCAGGCTGCAGATGTGTGGTGGTTGTGTTGGAGTATCTGGAGAGAGCAGGATCTCTGTCTGAGCTCCTGGAAGACTTTTGTGAAGGCCTGGAGAACAGGGGCTCAGGCAGCACTCTGCTCCTGAATCACGCTCAGAACAGCTCTGGCCTGTATTATTTCCAGGAGAGTAGTTTCTTGATTGGAACTCTTTCCAAGTCTTGCCTCCATGGCCCAGAGTTGCTGATGCAGCAGCATTTCCGCTGGGTTCAGTTGCGCTGGGACTCGGAGCCCCTGCACGGCCTGCTACACCGATACCTCAAGAGAAAGCTCATTCACAAGATGAAGGGACAAATGCCGCCAGTGTCTGACTTGCTGTGTAAAACCGTGGTGTGGATCTGCTCTGTCTGGCAACAGCTCAACTCCTGCTTATCTCGCCTGGGGACCCCAGAGGCGCTGATTGGACCACAGATGTTCTTTTCCTGCCCTGTGGTGCCAGCGCAGCCCCATGCTGTTGTCAAaTGGCTGCTCAGGCTGTGGAACGCAGTCGTGGTGCCCAGGGTGGAGGAAGCGATCGTCTCCCGTGTAACGGTGAAGAGGTCTCCAGTACCGCGCCAAGCTCCCGGCAACAAGAGTCTGAGCCCAGGACAGCAGGCCGTGGTCAAAGCTGCTCTCAGTATCCTGGTCAACAAAGCAGTTGTCCAGAGCTGCCCCCTACCCAGAGCAGACATCGACGGCCATCTGTCGGAGTTCCAGGGCGGGAGCTTCCCTCTGTCGGTGCTTGGCACTTACAAAGGCAGCGGGAAGAAGAGCAGAGAATGTGGCTCCTGGAGGAAAGTGAACACCAGCCCACGCAAGAAGGGGCCCCTCACGCAGGCCTGGAGTGGGGCCAGCACCCTGAGAGAAGGTTCACAGTCAAAGACCGACTTAGACATTCATTTCGGCAGGAAGAAATCAAACTTGCAGCAGTCTGACCATGAGCAGTCAAGATCTCTAGGACTGGACCAGAGATTTTCTCTCTGCTCAGATGATGAGAATGATCTGATGCAGGAACTGCAGAATATGTGCTCCAGTAAATCTGAGCCGGATATCAGCAAGATTGCTCACACCAAGGAGGATTTCATTGTGTTTCCTGGCTCTCCCAGTGGACAAACGCCCTTGAAGTCGGATAATGAAAAAACCACCCAGCCACTATCACAGACGGTTGGTAGCTGTCCATCAAACAGCAATGCACCTGGAACCGGCAGCAGCGACAAAAGGATCAGTGTCTCCGGACAGGCTAGACTGAAATCCCACCTGCCCGTTCCTATGAATAAAAACGCCCCGCGCCCTCACGGCACGCCtcacatcagcagcagcagcagcagcagaagtaCAAGGCAAGTACCACTGAACAATAACTCACCAGAGGAGATTTGGATTCTGCACAGAGACTTgcatgaaaataacaacaagTAGATCTTCTTAAATCTTTATATagacagtttttaatttatctcCATGTTGTAAAGTAGACTTATTACAGCCTTTGTATTTGTACTTGTTAACGTACTTGTTACACTGTATGACATTGTGTATTGGGGACCATAgtttattatatacaaaagtattgaattaaaataagaagaaaaaaagtgcttAACCAGCTTTTGCCTTTCAggtgaaaacattttggatCAAAGCAACAGAATGAGCAATTTTTGctattgaaatattttcaaatataaaagtgTTCTATGTTTAAATAGTTGCAAGgttgttttaaatactgttcCTATTAATCAGGGTTTTACCAAATATGTGTAAATAAGAAATTTAGAAAACTTATATGGTATATAGCTCGGTGTCAGTGGCATTACACTTGtacagtaaataagtaaaaacaaaaacaacacaaaaacaatattgtacatATGTTTGTAATATGGAGAATTGGGTTCATCAATTTTCACTTGTTTCAAAGTGAATGGAATGTGGCAATAAGTTACGTAATTGCAAACacaggacattttctttcaactGTAAgccataataaacattttaattatccaCATCTACCTGAAACGTGGCTGGTGGATACTTTCTGAGCTTGCATGAATTCCCACTCTTACAGTAAGCTGCACATGTTTGGTTTATTTACACGTTctcactttttctttcaaatttgtCGTGTtgaattgtattcaaaatattctGCTTATTCCAACAAACCTGCTCATACTATActtgaaatgtaaaatctgtCCATTAACAGGTGTTCAGAGAAATGTTCTGTTTCCTGCAATCAGTACCATTAAAACTGCACTGTTATTCCAGTATGTGTATTTGCTTcagcacattttgttgttaacaaaaaaaaaaaagacaaaatccaCTTTGCTCCTTCTTATTATGATCTGTTACAGTAACAAACACTGTTGAAATAATcacattattgtgtgtgtggggggggtgaaagtctatcattatatatatatatatatatatatatatatataatttactatgACCTAGAAACTACACTATTcatttacattataaaacaatctatatttttacatgtacaCTTCATGATCTGTGGTAGGCAGTAATGTAGTAAAACAGAGTATTTGAGACACAGGCAGTAGAAAACTGTTCaggttgtttttagtttaaataaaatattgtatgtcACTTTTTTGTACTGATCAATTTCCAGTTACATCAaattgagaggaaaaaaaagttaggtcttaaaaaataaaagcatttatcaGCATCAGAAAGTCTTATTTTCCTTTGTCTGCCCCTCAATGAAAAGCTAATGAATATCTCATTTTACATAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012863 True 6079 mRNA 0.48 21 10913292 10947270

Neighbor

gene id symbol gene type direction distance location
AMCG00012862 cttnbp2,LOC102784586,LOC102201476 coding upstream 30667 10874552 ~ 10882625 (+)
AMCG00012866 NA coding upstream 50992 10825020 ~ 10862300 (+)
AMCG00012855 NA coding upstream 173171 10699041 ~ 10740121 (+)
AMCG00012860 NA coding upstream 223488 10686553 ~ 10689804 (+)
AMCG00012859 NA coding upstream 228117 10666760 ~ 10685175 (+)
AMCG00012865 NA coding downstream 31613 10978883 ~ 10998312 (+)
AMCG00012864 NA coding downstream 52931 11000201 ~ 11006579 (+)
AMCG00012871 NA coding downstream 264752 11212022 ~ 11232862 (+)
AMCG00012870 mest coding downstream 296155 11243425 ~ 11248941 (+)
AMCG00012876 NA coding downstream 482696 11429966 ~ 11433519 (+)
G40303 NA non-coding upstream 170188 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 488921 10375031 ~ 10424371 (+)
G40203 NA non-coding upstream 740829 10172254 ~ 10172463 (+)
G40146 NA non-coding upstream 1439072 9473973 ~ 9474220 (+)
G40145 NA non-coding upstream 1439424 9473545 ~ 9473868 (+)
G40436 NA non-coding downstream 156555 11103825 ~ 11159087 (+)
G40496 LOC103376870 non-coding downstream 346947 11294217 ~ 11354359 (+)
G40498 NA non-coding downstream 457735 11405005 ~ 11405356 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 518951 11466221 ~ 11468218 (+)
G40555 NA non-coding downstream 797326 11744596 ~ 11744795 (+)
AMCG00012848 NA other upstream 371332 10540728 ~ 10541960 (+)
G40224 NA other upstream 468845 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 1783081 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 1827592 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2343401 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 1505969 12453239 ~ 12500402 (+)
G40629 NA other downstream 1541305 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 3481043 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3569513 14516783 ~ 14529806 (+)
G41059 NA other downstream 3685087 14632357 ~ 14633413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G159285 NA non-coding NC_053126.1 CM020923.1 30372104 ~ 30423001 (-)