AMCG00012864


Basic Information

Item Value
gene id AMCG00012864
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11000201 ~ 11006579 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012864
ATGCCCCTGTCTTTCAGGCACATGGGCGCTCTGGGCTCGCAGGTCCTGTGCCACAACGTGCCCGGCTTGGTGCCCCGGCAGCGCCAGCTGTGCCGCCAGCAGCCCGAGCTCATGCGCGTGCTGGGCGCGGGGGTGGCGGACTGGCTCGCGGAGTGCCGGCACCAGTTCCGCGCGCACCGCTGGGACTGCGGCTCCGGGGCGCGCGAGCGGGCGCTGCTGCTGGGGAGGCTGCTGCTGCGGAGCAGCCGTGAGTCGGCCTTTGTCTACTCCATCTCCTCTGCTGGGGTGGTGTACACGCTGACCCGAGCCTGCAGCCAGGGGGAGCTGGCGTCCTGCTCCTGCGACCCCGCAAAGAAGGGCTCCTCCAGGGACAGCAAGGGCTCGTTCGACTGGGGAGGCTGCAGTGACAACATCGACTACGCCATCGGCTTTGGCCAAGCTTTCATCGACGCCaaggagaggaaagagagggaTGCCAGAGCCCTGATGAACCTCCATAATAACCGAGCTGGAAGGAAGCCCTATATTGAGGAATGTGAAGGCTGGGCAGTAACCTCAGCTCTGGTCCATCGGCAGGCAGTGAAGCGCTTCATGGCACTGGAGTGCAAGTGCCATGGTGTGAGTGGATCCTGCACAGTGAGGACTTGCTGGCTGGCTATGGCAGATTTCCGCAAGACGGGAGATTACCTGCGGAAAAAGTACAATGGAGCGATCCAGGTCGTCATGAACCAGTACGGGACCGGGTTTACTGTCGCATTTAAAAAGTTTAAGAAGCCAACGAAGAACGACTTGGTGTATTTTGAGAACTCGCCGGATTACTGCATCAGAGACCATGAGGCTGGCTCGGTGGGCACCGGGGGCCGCTTGTGTAACCGGACGTCCCGGGGGGTGGACAGCTGCGAGGTGATGTGCTGCGGTCGGGGTTACGACACGTCCCGCGTCTCCCGGATGACCAAGTGCGAGTGCAAATTCCACTGGTGCTGCGCCGTCCACTGCAAGGACTGCCACGAAGTGGTGGACGTCCACACCTGCAAAGCTCAGAAAAGCTCCCATTGGCTGGACCAGACATGA

Function

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0048794 swim bladder development biological_process
GO:0030182 neuron differentiation biological_process
GO:0045165 cell fate commitment biological_process
GO:0072574 hepatocyte proliferation biological_process
GO:0005615 extracellular space cellular_component
GO:0005109 frizzled binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012864 True 1071 mRNA 0.62 4 11000201 11006579

Neighbor

gene id symbol gene type direction distance location
AMCG00012865 NA coding upstream 1889 10978883 ~ 10998312 (+)
AMCG00012863 NA coding upstream 52931 10913292 ~ 10947270 (+)
AMCG00012862 cttnbp2,LOC102784586,LOC102201476 coding upstream 117576 10874552 ~ 10882625 (+)
AMCG00012866 NA coding upstream 137901 10825020 ~ 10862300 (+)
AMCG00012855 NA coding upstream 260080 10699041 ~ 10740121 (+)
AMCG00012871 NA coding downstream 205443 11212022 ~ 11232862 (+)
AMCG00012870 mest coding downstream 236846 11243425 ~ 11248941 (+)
AMCG00012876 NA coding downstream 423387 11429966 ~ 11433519 (+)
AMCG00012884 NA coding downstream 625793 11632372 ~ 11770268 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 779359 11785938 ~ 11791546 (+)
G40303 NA non-coding upstream 257097 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 575830 10375031 ~ 10424371 (+)
G40203 NA non-coding upstream 827738 10172254 ~ 10172463 (+)
G40146 NA non-coding upstream 1525981 9473973 ~ 9474220 (+)
G40145 NA non-coding upstream 1526333 9473545 ~ 9473868 (+)
G40436 NA non-coding downstream 97246 11103825 ~ 11159087 (+)
G40496 LOC103376870 non-coding downstream 287638 11294217 ~ 11354359 (+)
G40498 NA non-coding downstream 398426 11405005 ~ 11405356 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 459642 11466221 ~ 11468218 (+)
G40555 NA non-coding downstream 738017 11744596 ~ 11744795 (+)
AMCG00012848 NA other upstream 458241 10540728 ~ 10541960 (+)
G40224 NA other upstream 555754 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 1869990 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 1914501 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2430310 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 1446660 12453239 ~ 12500402 (+)
G40629 NA other downstream 1481996 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 3421734 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3510204 14516783 ~ 14529806 (+)
G41059 NA other downstream 3625778 14632357 ~ 14633413 (+)

Expression


Co-expression Network