AMCG00012869


Basic Information

Item Value
gene id AMCG00012869
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11096485 ~ 11120770 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012869
AGTTCGCCTGATGATGCATCTGGGTGTGGAAAACACGGAGAGGGGTACCAGCTGGAAGTCTCCACAGTGTTGCGGCGCCTCGACCTGTTCCTGGGAAAGTTCAGTAACGTCCTGCTGACGTCCATCGCTGTCTTCACCAGAGGGGATCTCACCTTAGCCAATCTGGGCACATCCGAAGGCAGAGTAATTCAGgTTGTGATCTCGCGCTCAAGATCCAGGACTCCTCATGTGAATTTCCAGTTGGACTCTTTGCCAGTATCTCCTGAAGTTGCCCTTGTATCACCTTTGAAACCGGATGGCTTTATATTGTTGATCACAGGAAATAAGATCTCAAAGATGCCTTTATCAGGACCAGGCTGCGATCATTTCCCATCATGCACCACGTGCCTGTTAGCCCCGGCATTCATGCAGTGCGGGTGGTGTCTTAACCGCTGCTCCAGAGCCCAGGAGTGCAAGTCCAGTCCCTGGAATCAGGAATCTTGCAGCCCCACTATCacaaagATATACCCCCTTACAGCTCCCACAAGAGGCAGAACAAAGCTAACACTCTGTGGGAGGGATTTTGGTTTCAATAAAAGTGAGATATTTGATTCAAGTCAAATAAAAATCGAAATGGGAGAATCTCCTTGCAAACTAGACCTGGGGCTCAGCAACAGCAATAGATTGGTCTGTTTACTGAGTGCAGTCAATTCAAATCGCAGTAATACGATCATCAAAGTATACAGTGGGAAGCATGTCACTGAAAAACAAGGATTCTCATACGTGAATCCAGTTATCAGTGAAATCATTCCAACCAGTGGGCCTAAATTTGGGGGAACAATGCTAACCCTGAAAGGTGCTTTCTTGGACAGCGGAAGCAGATCAGAAGTCATAATTGGGAAATCCGTGTGCACACTGCAGAGtGTCTCAGACACTGTGTTGAAGTGTAAAACTCCACCCCAGTCAGCCCCTGCAAAATACCCAGTGAAGCTACAGATTGACTCTACTGTAGTTGATGCACCTATTCTCTACACATGTACTGAAAATCCTTTCATTTCGAGCATTCAACCATCAAGAACTTTTTTCAGTGGAGGCAGCACGCTGTCCGCACATGGAACCTATCTGGACTCTGTGAGCTCAGTAGAGATGATTGTTGTTCCACCACAAGAGGGAAAGGAATTTCGAGTGGAATGCTCAAAAGGTGAAGATAAGCTTGTGATCCACTGTACATCACCCTCGTTGAAAGATCTTCATCTTCACCTGCCTGTGCTGACGAAGGTCTTCTTCACCTTGGATGGGTTCACTACAGGGCAGTTTGACTTGTATTACGTGGAGGACCCACAGTTTGAAGAGTTTGACAAACCAAAAGTGACTTCCAAAggcaataaacacattttagagATCAAGgtaTCCAAAGTGGACTTTGAGGCTGTTCAAGGTGAAGTGCTTAAAGTGAGCAACAGGAGCTGTGAGAATATCTTTCTGGTGGGAAACAGTATACTATGCACTGTTCCCATGGAGCTCCAAGCTGGCACCAATGAACTTGAAGTGGAGTGGAAGCAAGCAACGTCGGTCGTTGTCCTTGGGAAAGTAATGCTTGCCAAAGAGCAGGACTACACTAGCCTCATTGCAAGTGTAATGTCCGTAAGCATCCTGCTTCTTGTCATCTTGTCTCTCTTTGTGTGGATGAGGAAGAAGAAACGCATTGAAGACCAGAGTCAGACCCTCTCGCAGACCGAATCCTGCCGCCTGCCTCCATACCCTCACACAGACCTGTCTCCCATTTTGTCCAGTGGAGACACGGATTTGGCCACGCCCCTGCTTCCTTCCTCAGTTCACATCGACATCAACAGCCTCAACCCGGAGCTGCTGAAAGAAGTCCAGCATGTGGTCATAGCCAGAGATGACCTCCTCTTGCACCTTAACGAAGGCATTTTGGCTGTGTTTTCCATGGAACACTTCTGGATAAAGACGGACTGA

Function

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0001764 neuron migration biological_process
GO:0031017 exocrine pancreas development biological_process
GO:0001889 liver development biological_process
GO:0021707 cerebellar granule cell differentiation biological_process
GO:0016310 phosphorylation biological_process
GO:0033339 pectoral fin development biological_process
GO:0016020 membrane cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K05099 MET, HGFR; proto-oncogene tyrosine-protein kinase Met

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012869 True 1959 mRNA 0.48 13 11096485 11120770

Neighbor

gene id symbol gene type direction distance location
AMCG00012868 capza2 coding downstream 11660 11067150 ~ 11084825 (-)
AMCG00012867 st7,LOC106573121,LOC106530896 coding downstream 66146 11007933 ~ 11030339 (-)
AMCG00012861 NA coding downstream 117386 10942840 ~ 10979099 (-)
AMCG00012857 atp6v1f,LOC101079638,LOC101164034,LOC104938441 coding downstream 273632 10820259 ~ 10822853 (-)
AMCG00012852 NA coding downstream 440352 10644390 ~ 10656133 (-)
AMCG00012875 cav1,LOC106561554,LOC107574005,LOC107574842,LOC107679630 coding upstream 27522 11148292 ~ 11161963 (-)
AMCG00012873 tes coding upstream 85781 11206551 ~ 11228481 (-)
AMCG00012872 NA coding upstream 113176 11233946 ~ 11242870 (-)
AMCG00012874 copg2,LOC107744880 coding upstream 128348 11249118 ~ 11259131 (-)
AMCG00012881 NA coding upstream 142887 11263657 ~ 11264562 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 356184 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 357107 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 357888 10737982 ~ 10738597 (-)
G40323 NA non-coding downstream 367665 10728495 ~ 10728820 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 545108 10549657 ~ 10551377 (-)
G40584 NA non-coding upstream 1116459 12237229 ~ 12239457 (-)
G40684 NA non-coding upstream 1462741 12583511 ~ 12583719 (-)
G40735 NA non-coding upstream 1620405 12741175 ~ 12742696 (-)
G40747 NA non-coding upstream 1786677 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 2348535 13469305 ~ 13558179 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 234163 10857881 ~ 10862322 (-)
AMCG00012858 NA other downstream 342787 10740354 ~ 10753698 (-)
AMCG00012829 NA other downstream 1944080 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 3192030 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 4400561 6638480 ~ 6695924 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 1119626 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 1775750 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 1994123 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 3219646 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 4598743 15719513 ~ 15722457 (-)

Expression


Co-expression Network