AMCG00012870 (mest)


Basic Information

Item Value
gene id AMCG00012870
gene name mest
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11243425 ~ 11248941 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012870
CCATAGGGGGCTCTTTTCTGCATTGGGAGGCTTTGTGATTACAGTGTAATCCTTAATGCTCCTGTCGTATCCACAAGTGTTCGCGCTACACCATGGTCTGGCTGCTGCACACTATTGTCTTCCCGTTGAGATGAGGGAGTGGTGGATCCAAGTGGGGCTCCTGACAGTGCCCCTCATCGCAGTGTACCTGCACATCCCCCCGCCTCACCTGTCCCCAGCCCTGCACTCCTGGAAGGCATCAGGGGCCTTCTTCACATTCAAaggaaatgtcattttttacaAAGATTCCTGGGGTGCTGTTGGCAGTTCTGATGTGGTCGTACTTTTACATGGGTTTCCAACGTCCAGTTATGACTGGTACAAGATATGGGATGGGTTGAACATGAGATTCAACCGAGTTATTGCACTGGACTTCCTTGGGTTTGGTTTCAGTGACAAACCTAGGCCTCATCGGTACTCCATCTTTGAGCAGGCCAACATAGTGGAAGGGCTGATGGCTCACCTGGGCCTGATGGAGCAGAAAATCAATCTCCTCTCTCATGACTATGGAGACACGGTGGCTCTGGAGCTGCTGTACAGgagtgAACACAACAGGAGTGGAAACTTGAAGATCAgcagtctctgtctctccaacGGAGAAACGCACTATCCAAGATTCCTGCAGAAGTTACTCAAAGACAGTGGCTTCGTGTCTCCAATACTGACTAGACTTATGAACTTCCTAATTGGAGCTGTGTTTGGTCCGTACACTCAGCCATCAGACGGTGAATACTGGGACATGTGGACAGGGATCAGGTTTAATGATGGAAACCTTGTAATGGACAGTATTTTGCAGTATATAAACCAGAGACTGAAGCATAGAGACCGCTGGGTTGGAGCACTAGCTGCCACCACCATTCCTTTGCATATGATTTATGGACCTCTGGACCCTGTGAACCCTCATCCTCAGTTTATCCAATTATACCAGCAGCTGGTCGAGAGGTCCACAGTGTCCGTTCTTGATGACCATATTAGCCACTATCCCCAGCTGGAGGACCCCACTGGCTTCCTGAACGCCTATCTGAACTTCATCAACTCCTTCTGAACACGGGTCACCACTGCTGGACTCAATACTGCTTTGAGTCACTCCGTTGGGCTACGAGGAAAAACTCTCCTTTCACTGCATTCTGTCACAACTCAGGAAGATCAAGGACTGCAGGTGTTTAGCAGGCAAACATTGGttttgaatatttcattttaaaaatacagcaaggggtaactattaaaaaaatgtatttacatctTTGGGCAATAGGGGTGAGTAATACTTATTTTGATTCAGATGTGATATCCTGTTCCCTGTAAGTGCATCTAGTTTGTATCTCAACTGAGGATAGAAATGAACAACCGGACATTCTTCATTATTGACACATTCTGACAGTGACTTTCAGTGACCGTGGACTACGCTACTATACATTATCTCAACAGCggttttatttgtctttgatAGGTGTCCTGCTTGTATTCATCCTGATACTTGTCACTAGCTGATTTTCATATGTCTTCAGTTTTTGAAAGTTATGAAGGTTTTATAATTTTCAcaaattgatttgaaaaattacaaatcCTCCAACCTATATAAAGACCCAAAGTATTTTTATCTACAGTAAAGATACAATGTGGATGTGtagttttgtattgtgttttcagtAAAGTATTTTTAGCTCTCTCTGAAAACAACCCTTGTTTAATAAGTAGGAATACAATGAAATAAGCAATTGAAAGTATCTGAATTTCATGGACTGAAAATCAAGAAACTGTTTCTAACCAGTTATACAGACAGGTACaattactgaaaatgttatgcaaatgTCATACTTATGGGTTTTTATACAcaagttataattataattaacagtATTGtgatatggcaagccaaataaCTTGTCAGTTTACAGATTGGTAAACTTAGCATTGgatcaaatgcaaaaaaataataataatgattgcaAATAAAACTAGTTTTTCAAAAATTGTACAGTACGTTTTAC

Function

symbol description
mest Predicted to enable catalytic activity. Predicted to be involved in regulation of lipid storage. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human MEST (mesoderm specific transcript).

NR:

description
alpha/beta hydroxylase

GO:

id name namespace
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012870 True 2030 mRNA 0.42 12 11243425 11248941

Neighbor

gene id symbol gene type direction distance location
AMCG00012871 NA coding upstream 10563 11212022 ~ 11232862 (+)
AMCG00012864 NA coding upstream 236846 11000201 ~ 11006579 (+)
AMCG00012865 NA coding upstream 245113 10978883 ~ 10998312 (+)
AMCG00012863 NA coding upstream 296155 10913292 ~ 10947270 (+)
AMCG00012862 cttnbp2,LOC102784586,LOC102201476 coding upstream 360800 10874552 ~ 10882625 (+)
AMCG00012876 NA coding downstream 181025 11429966 ~ 11433519 (+)
AMCG00012884 NA coding downstream 383431 11632372 ~ 11770268 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 536997 11785938 ~ 11791546 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding downstream 714418 11963359 ~ 12008431 (+)
AMCG00012886 plxna4,LOC106921988 coding downstream 772525 12021466 ~ 12053113 (+)
G40436 NA non-coding upstream 84338 11103825 ~ 11159087 (+)
G40303 NA non-coding upstream 500321 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 819054 10375031 ~ 10424371 (+)
G40203 NA non-coding upstream 1070962 10172254 ~ 10172463 (+)
G40146 NA non-coding upstream 1769205 9473973 ~ 9474220 (+)
G40496 LOC103376870 non-coding downstream 45276 11294217 ~ 11354359 (+)
G40498 NA non-coding downstream 156064 11405005 ~ 11405356 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 217280 11466221 ~ 11468218 (+)
G40555 NA non-coding downstream 495655 11744596 ~ 11744795 (+)
G40571 NA non-coding downstream 945544 12194485 ~ 12194686 (+)
AMCG00012848 NA other upstream 701465 10540728 ~ 10541960 (+)
G40224 NA other upstream 798978 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2113214 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2157725 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2673534 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 1204298 12453239 ~ 12500402 (+)
G40629 NA other downstream 1239634 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 3179372 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3267842 14516783 ~ 14529806 (+)
G41059 NA other downstream 3383416 14632357 ~ 14633413 (+)

Expression


Co-expression Network