AMCG00012872


Basic Information

Item Value
gene id AMCG00012872
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11233946 ~ 11242870 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012872
ATGATTGGCTCGCTGCAGCTTTTCAGCCAATCGGCGTTTGAAAAGATGTCGGCCAAAAGAAGTCTCGGCAGTGCAGAGtacttgaaaaagaaaatcccccAGAATCCAAAATACCAGTATGTGAAAACCAGGCTTGATACAGACAATATTTCGGTGTTGTCTGAGCCTGACGCAGAGCCTCTCTCTGAAAGGACGAATGGAACTGGGACAACCTCTGTCCAGTTTATAGACAACAACAATGAAGCTGGTGATGCGGGCCTTTCACCGCGGTCAACCCTTCAAAGTGTAATAAGTGGTGTTGGAGAGATGGACTTAGATAAGACTGCAGAGAAGAATGTGAATCAGAAGTCGGCTCCAAGCCCAAGGATTACAGACAGACCGTACCCAGACTGTCCGTACTTGCTACTGGATGTGCGAGGCAGGGATGAATATGACCAGTGTCATGTTATTGGTGcaTATAGTTTTCCTATAGCAACTCTCTCCAGGACGATGAACCCATATACCAAGGAAGTACTGGAATATaaaaacacgTCGGGCAAGATCATCATAGTTTACGATGATGATGAGAGGATTGCCAGCCAGGCGGCCACCACCATGTGTGAAAGAGGATTTGAAAACCTGTTCATGCTTTCAGGAGGGTTAAAGGTCATCGCACAGAAGTTTCCAGAGGGACTGACGACAGGCTCTCTCCCAGCACACTGCCTCCAGTCAACCCCTCCAGTGCCAGGCCGCTCCACCCAGAGACTGCCCTCGTATCCAGCTGAGAATAAGTGGCGATTTTCTGCCGAAGACCTAAACAATATCCAGATTTATTTGGAGGAGATGCTAATCCCTACAGATACTAATAGTCGTCTTAGTCGTATGTCGAGAGGAAGTTCCCAGGTCAAGTCTTCAAGCGCGAGGAGCCGCCAGACCCCCTCAGTAGCTGGGTCAGAGAGCAGCAGATCACAGAGCAGTAGGCCATGGaagtaacaaaatgcaaaaacatatgtattttcaaacataacaaatacaatgtatCCATGTGAGGTAtgaatgttacattatttttggttttgattgaTTCTTGAATAGGGGTTTATGTACAGCAGGATTATCCCTACTCTTGGTCCCGGAGAGCTCCGAATCCAGACAAGACTTGGAAATGGTTAATTCTGATCATTTCAGCTGGTGTTAAATTCAGTAATAAAGAGATAATGTCTTCATTgttattaaactgtaaaacatctCTCCCTATACAGAGTTCCTTGTATTGCCAATATTAAGCTTGTGTCTTTAGAAATTGATGATTCAGGTTGATCTAAACCAAATTTTGGTTCTTCGGGACCAGGTCTGGGGACCAGTGAACCTACACAACACTTTATAAGTCTTTTACTGTTGTTTTGAGCTACATGCGTGTTATAGTGGTTACTTGCTACTTCTTATTTATCAGtttaaaaattagaaaatacTGTATGACCGGAGTGCAAGAGTTGcagtgtaattgtttaaaagttTCTCCTTCTGTTTGTGTTGGATTCTGATCATGTTTTAACTATTGCCTATCCCTTTAATCTGAATTTCAAATATTCCCAAATCTTATTCCACAGTGCCTGTTTAGATCAAACGCTTATTACAGtcttaacatgaataaaatatgaatgttttaggTTACACATCAATCATGGAATAAACATCAGCTTCcgaaatatttaattaattttactgcTGTCTGCTCACATTAAACGCAACGCCATTTTCGTAGTCAGTTTCCTTGATTCGACTTCCAAACTGTAAACatgtgaaattacatttctgtgttctgaacctgtttttaattacacGTATGTTGCACATAATACTAAGCCTGATGAGTAGGACTGTACCTCTGTCATCAAACCCAccacctttttatttctttcgtatttattctttacaaaactgctgTTTACTTCAGTTTGGCTGAAGGATTTCCTCTACCTTAGAATGTTAAGCGTGCCAACTGTAAACATACTTCATctccatcttttaaaaataccGTCTGAGTAATAGTATAATTTCCCCCTTTTGTGAGGTGATATGTACACCAGCTCTTAATCTCCTGCGTCTTGATTATACAGACTCAGTTGTTTCTCATCTATTTTGATTGAAGTATAAGGTTTCACACACGCAAACAGTACTCTTTCAGGCCTACACATTCCTTAAATAACTTTAGATAAGCACAcctgatgtgttttttatttttaaataaaatagtggCTGACAAttgaaaatgataaatatttcatgttatgtattgttttaatagtttttctttgtatGTGCTCATCTGAGGTTATGTGAGCTTTGTGAAACCCTGAAACATGACGCTTAtcataagaaaaagaaaagatttcaaatcaaaacatttggAGAAACTTTAAAAGGGAAACTATTTTTATGTAGTAGTTAGCAATGTGATAATACAAGGGCCtgattaaaacagaaattggTTACAAACGTGGGTAACCAAAAACTACAGACATACTCTGTAGCGGTTTGGCTTTTAATCATATGCTTCTGTTGTCTAATCAGAAGTAAAACCACCATGATGTACATGTTTGTAGCTTGCTATTAGAGGGTggaccattttaaaaataaatctggtcCTGCTTACTGGAAATATTAGTCATTTTACGTTTCAGTACATTCTGTTTTCAGAATAGGATTACAACTTTAGAGtatataaatgttgttttacagtGTAGTCTTTGCTACTGAGTAATATTCATAGACCtgtcatgtatttttttgaGTATGATAGAATATGGTGAGGAATTTAACTAAAACTTAAATTGTAAGGTCAGTTTGCATTCCTGTAAGAACCTCagattcaattaattttaaaacattttgggtGTTGTGGAGCCTGCATGTCTAATCTGATGCATTCAAATGATCTAACGAAGCACAGTAAATTGTTAGTGTAAATGGATGTCCTACATAGAAAGGCATTGTTTGTGACCTCAGACACCCCGAAAATGTAGGGAACTGCAGCCAAACTCTGTGGTCAAGTTATAGTGAAACCTTACAATTCATCCAGTGCTATAATATTATCAAGTTTGTGTATTAATTTGCATACTCAGTATTGATTACAAAAGTATAAATTACAAACCACCTCTGAGTTAAGCATAGGTGGACAATCTAAAATTATGGGTAGATAAAccataatattttaatgtagttaatgaaataatttctgaatctttttatttttcattattgtgaTACCGGAAGcagttcttgtatttatttatatgattttaaacTATTCCTCTGAGctaaaaaacagtaaaagtgtatttaaatttgaatgtatGAGCTCTTATGGAAATCTTTGGTATGAGCTAACCACAAACAACTTTTCTCTTTTGACCATGCATTAAGTGTGTTTCTAAtcagattaattaatatttgtactGCAGAATGCTTGTTTGTAAGCCAGTATCATGGAACTGTTTTCTGGTTatataacaaacacacatttttatgttattctAAGAATAAAAAGGAACAAGGCAATTCTAAagaattaaagaaaagaaaataagtgcctagaggttttgttttcaacGCAATGGTTACAGTGCACCAcaaataaatagagaaaatgttttattttcatgtattggAATtagttaaaacaatgtattgctGTAAAATCCTAAGtatgaaaacacaaatccaTAAATTAAAGCATGTTCTCAAAGTGCATTACCTTATAATTGCCACCTACAAAggttgttctgtattttaagaGTGAAAAACTTTTCTACTACTGCCGATCTATTACTGATTTACTGATTTTTTGCATCTACATTAAAATCTTATTTTGC

Function

GO: NA

KEGG:

id description
K16455 CEP41, TSGA14; centrosomal protein CEP41

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012872 True 3854 mRNA 0.36 9 11233946 11242870

Neighbor

gene id symbol gene type direction distance location
AMCG00012873 tes coding downstream 5465 11206551 ~ 11228481 (-)
AMCG00012875 cav1,LOC106561554,LOC107574005,LOC107574842,LOC107679630 coding downstream 71983 11148292 ~ 11161963 (-)
AMCG00012869 NA coding downstream 113176 11096485 ~ 11120770 (-)
AMCG00012868 capza2 coding downstream 149121 11067150 ~ 11084825 (-)
AMCG00012867 st7,LOC106573121,LOC106530896 coding downstream 203607 11007933 ~ 11030339 (-)
AMCG00012874 copg2,LOC107744880 coding upstream 6248 11249118 ~ 11259131 (-)
AMCG00012881 NA coding upstream 20787 11263657 ~ 11264562 (-)
AMCG00012880 NA coding upstream 122144 11365014 ~ 11386073 (-)
AMCG00012882 NA coding upstream 182463 11425333 ~ 11427587 (-)
AMCG00012878 NA coding upstream 193142 11436012 ~ 11462738 (-)
G40327 kcp,si:dkey-266m15.6,LOC107564914 non-coding downstream 493645 10739895 ~ 10740301 (-)
G40326 NA non-coding downstream 494568 10739085 ~ 10739378 (-)
G40325 NA non-coding downstream 495349 10737982 ~ 10738597 (-)
G40323 NA non-coding downstream 505126 10728495 ~ 10728820 (-)
G40266 calu,LOC102225510,LOC105939814 non-coding downstream 682569 10549657 ~ 10551377 (-)
G40584 NA non-coding upstream 994359 12237229 ~ 12239457 (-)
G40684 NA non-coding upstream 1340641 12583511 ~ 12583719 (-)
G40735 NA non-coding upstream 1498305 12741175 ~ 12742696 (-)
G40747 NA non-coding upstream 1664577 12907447 ~ 12911725 (-)
G40798 NA non-coding upstream 2226435 13469305 ~ 13558179 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 371624 10857881 ~ 10862322 (-)
AMCG00012858 NA other downstream 480248 10740354 ~ 10753698 (-)
AMCG00012829 NA other downstream 2081541 9112441 ~ 9152405 (-)
AMCG00012782 NA other downstream 3329491 7891489 ~ 7904455 (-)
AMCG00012751 NA other downstream 4538022 6638480 ~ 6695924 (-)
AMCG00012888 mkln1,LOC107104017 other upstream 997526 12240396 ~ 12271789 (-)
AMCG00012906 kin other upstream 1653650 12896520 ~ 12906333 (-)
G40778 LOC107575789 other upstream 1872023 13114893 ~ 13115487 (-)
AMCG00012931 snrpf other upstream 3097546 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 4476643 15719513 ~ 15722457 (-)

Expression


Co-expression Network