AMCG00012876


Basic Information

Item Value
gene id AMCG00012876
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11429966 ~ 11433519 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012876
aTGAATATCTTATTTGCTATAAGTCTAGTTTTTCTCGGGTGTTGCAGCAATGTGGTGTTCTTGGAACTTTTAGTAAGgGCGTTCCCAGGATGCGGCAACATCGTGACATTCGCACAGTTCGCATTCATAGCGTTGGAAGGACTGATCTTCGAAAGTAATTTTGGAAGGAAGAAGCCGGCCATTCCGCTTAGGAACTATGTGATAATGGTGACTATGTTCTTCGCCGTAAGCGTGATAAACAACTATGCTCTCAGCTTCAACATTGCAATGCCCCTGCACATGATATTCAGATCATCCTCACACACAGACTCCGCTGAAGAGGAGGGTCTGTCCACCTTCGTACGCTGGCTTGTCGGTATCGCTATGTTGACGTTTGCACTCCTCATGTCTGCAAGAATGGGCATCTTCCAAGAAACCCTTTACAAAGAGTATGGCAAGCACTCCAAAGAGGCCCTCTTCTACAACCACTGTCTGCCTCTGCCTGGGTTTCTCCTGCTGGCCACTGATATCTACAACCATGCTGTGCTCTTCAGCAACAGCGTGATAGGCATAACAGCCCCTGTGATGTGGATCTACCTCATATTAAACGTGATCACACAAGGAGTCTTTATTCTCACAACGGAGTGCACTTCTCTCACCGTCACACTGGTGGTCACCCTGCGTAAATTCATCAGCCTCATCATCTCCATCATCTACTTCAAAAACCCATTCACCGCCTGGCACTGGGTGGGGACCCTCGTAGTCTTCATTGGGACACTAATGTACACAGAGGTGTGGAGCAGCGTCAGGACGCTTCTCCGTGGTGACAAGAAAGAAGTGAAAAAGGATTAA

Function

GO:

id name namespace
GO:0005794 Golgi apparatus cellular_component
GO:0016020 membrane cellular_component

KEGG:

id description
K15278 SLC35B4, YEA4; solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012876 True 831 mRNA 0.48 8 11429966 11433519

Neighbor

gene id symbol gene type direction distance location
AMCG00012870 mest coding upstream 181025 11243425 ~ 11248941 (+)
AMCG00012871 NA coding upstream 197104 11212022 ~ 11232862 (+)
AMCG00012864 NA coding upstream 423387 11000201 ~ 11006579 (+)
AMCG00012865 NA coding upstream 431654 10978883 ~ 10998312 (+)
AMCG00012863 NA coding upstream 482696 10913292 ~ 10947270 (+)
AMCG00012884 NA coding downstream 198853 11632372 ~ 11770268 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 352419 11785938 ~ 11791546 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding downstream 529840 11963359 ~ 12008431 (+)
AMCG00012886 plxna4,LOC106921988 coding downstream 587947 12021466 ~ 12053113 (+)
AMCG00012885 NA coding downstream 801848 12235367 ~ 12242214 (+)
G40498 NA non-coding upstream 24610 11405005 ~ 11405356 (+)
G40496 LOC103376870 non-coding upstream 75607 11294217 ~ 11354359 (+)
G40436 NA non-coding upstream 270879 11103825 ~ 11159087 (+)
G40303 NA non-coding upstream 686862 10740432 ~ 10743104 (+)
G40214 NA non-coding upstream 1005595 10375031 ~ 10424371 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding downstream 32702 11466221 ~ 11468218 (+)
G40555 NA non-coding downstream 311077 11744596 ~ 11744795 (+)
G40571 NA non-coding downstream 760966 12194485 ~ 12194686 (+)
G40604 NA non-coding downstream 917331 12350850 ~ 12351728 (+)
G40643 NA non-coding downstream 1087944 12521463 ~ 12521819 (+)
AMCG00012848 NA other upstream 888006 10540728 ~ 10541960 (+)
G40224 NA other upstream 985519 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2299755 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2344266 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 2860075 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 1019720 12453239 ~ 12500402 (+)
G40629 NA other downstream 1055056 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2994794 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 3083264 14516783 ~ 14529806 (+)
G41059 NA other downstream 3198838 14632357 ~ 14633413 (+)

Expression


Co-expression Network