AMCG00012884


Basic Information

Item Value
gene id AMCG00012884
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11632372 ~ 11770268 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012884
atggaTTGGCTGGAAAAGCCAGGTGACACACTGAAACATACAAGCACCAACGGGGAGCCGAGGAAGATACAGAACGCCTGTACAGGTCTGCAACACCGGCTTACGAAAAGCGAAAAAGTGACTGGTTATGATGGAGTGGACTCTGGGATAGCACCGTCGTTTCAATCATCAAGGGCCACTGGGAAGAATCAAAGACGACGGCACCTCACGAGGCAAAGCAAGGGCCTTGCGTTGCTAATACGACACCTGTCGAGAAAAGCCTGGCCTGGAGTCTTCTACCTGTTTGATCTTGTTGCGCGAGTTGGTGATGCGCTCTGTGATGCTCTGGTAGGTGCGGATGGCGGTCGTCAGCTCTGTGTAATGCTGCACAATCTGTTCATCCAAATCGTGGTCGCACTTCTCATAGGCCTCCTCAAGACGGCCTTTCTCAGTCTCTCGGTCCTGAACATCGTCACTGCTCGACAGTGTTCTGCAAAGAAACAATGGCAATGTGGGAAGGGCAAGCGGTGGGAGAGTGTGCCGTGTGTCCTGATTGTGTCATGCGGCCTTGTGGAGGGCTGCGACATGGGAGGCAACAGTAGCACTCGCCGAGTCTCCTTTGAAGCCGATGAGAATGAAAACATAACGGTGGTGAAGGGCATTAGGCTGTCTGAAAATGTCATCAATCGCATGAGAGATTCCTCCCCAGCTCCTGCCAGGCCACCTCCTCGAGCCCCCGagtctctccctccccccacaGgaagagaaaaaggaaatcatAAAATGCTAAGCATTACAGAGGAAGAATTAAGAAGGAAAATTTCCGAAGAGCTTGAAAATGAGCGAAACAAGAGAGACCCAAAAATGGTGCAGAAATGtccaaACCAACCAGATGCCAGCCGTGCTTCAAGCCAGCCTCCAAAACGCATGGCGCACAGTGGGCTACGGCTGGAACAGGATAAATCTTTTGTTCGTGACGAAATTGGCAAAGCACTGGTGAGGGAGCGTGCGGCCGCGGAGGACAGCAGAGCCATCCTGCGGGAAAGAGTGGCTGCAGAGGACGAGCGTCTGAAAGCCAAGCGCTTCGTGAAGCAGGCAATGCAGCTGAACCCTTTAAAAACAGCCATCATTAAGGCAAGCCACTCGGTTTCAGAGCAGAGAAGACTGTGGGATGAACTCGATAAGCTCATGCAGAAAGGCAACCCTGCTAACCCAGACCCCCCGAAGGGAATCCATCCCAACGTCACAGtgttaatgaaaacaacacatgtGAAGCAACCGGAGATTGAAATTAAGGCCAAACAGCTggaagaaaaagacagagagcTGAGAAAACAAGATATCTATTACAAGGAGCAACTAGCCAGACTGGAAGAGAGGTTGAGGAAGCTCAGCCCACAAACGAGCACCCTTAGACACGAGCTGGCTAGTGCACAATTCTATAAAGTCACAACGGAGCAGTATCAGCAAGCTGTCAATGAGGTCGAAGCCAAGTTCAAGCCTCATGTGACTGCCGAGGGGAAATGCAGAGATGTGAAGCACGCTGCCGAGAGACCCCATGAGAATGCAGCTACAGCCTTCAAGGtacaaagGAGATATGATTACAGTCCCGTGTGTGCTGACCTCCAGGGGCAGATTTTGAAGTGTTACCAAGAGAACCAAGGACAGACCCTGTGCTGCTCCACGCTGGCTAGCCTTTACCTTCAGTGTGTCAGCAGCGCTAAACAGTATCTTTATCTGATCCTGAGCAAAAGCTTATCTCCCTCTTACCATTATAAGGGCGTTATCGATAAATCAAAGGAGGCGGTGGTCCCCTGGCAAAAGGTTTCAAGTGGTCAAGGGCTCTGCGATCTTCTCGATGTCCACGTGATTAACGAACACCAAAGTTTACGCTTTTCTCGCTGCCGGAGGAAACGCATCACTGAGATTGATGTTCCTGTCCCCGCACTGGATTTCCTGAAAGATGCCCCGCAGTTTCTGGTAGACACATTACAAGAGGAAGACGTGCTGTGTGAATCTGAAAGCAAGGCGTATTGTCAGAAATCCATTGCCATCAGTATGCATGAGGAGACCGTGTCCCAGAAGAGCGATGGGCGCACAGCACCTCCGATCTCGGGGAACTTCTTCTGCGGACCACGGCGTGGCATCTTCGGGGAGGGAAACCGCAGCCCGGGCGCTGGGCAGTGTGCGGGCGAGGACGCCGGCGGGCGAGATGCTGTGCGCGGCGTAGATGTGGAAGAAGGACCCGCTGCTCACACGCGTGGATGGCAGATCTGCGAGCCGCCGGCGAGTGCACTGGCTTCGGCAGCGTCTCGACAGATCGCACCTGACACGGAGACGCGGCTGAAGCGCTGGCGCCGCTGGATTTGTTCAGATCTGGGTTTGGACGCGTCTAGATGGTCATTTCGGAGTATCTGA

Function

GO: NA

KEGG:

id description
K17563 CHCHD3; MICOS complex subunit MIC19

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012884 True 2397 mRNA 0.53 27 11632372 11770268

Neighbor

gene id symbol gene type direction distance location
AMCG00012876 NA coding upstream 198853 11429966 ~ 11433519 (+)
AMCG00012870 mest coding upstream 383431 11243425 ~ 11248941 (+)
AMCG00012871 NA coding upstream 399510 11212022 ~ 11232862 (+)
AMCG00012864 NA coding upstream 625793 11000201 ~ 11006579 (+)
AMCG00012865 NA coding upstream 634060 10978883 ~ 10998312 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding downstream 15670 11785938 ~ 11791546 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding downstream 193091 11963359 ~ 12008431 (+)
AMCG00012886 plxna4,LOC106921988 coding downstream 251198 12021466 ~ 12053113 (+)
AMCG00012885 NA coding downstream 465099 12235367 ~ 12242214 (+)
AMCG00012892 LOC103383002,LOC106525804 coding downstream 612790 12383058 ~ 12392105 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 164154 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 227016 11405005 ~ 11405356 (+)
G40496 LOC103376870 non-coding upstream 278013 11294217 ~ 11354359 (+)
G40436 NA non-coding upstream 473285 11103825 ~ 11159087 (+)
G40303 NA non-coding upstream 889268 10740432 ~ 10743104 (+)
G40571 NA non-coding downstream 424217 12194485 ~ 12194686 (+)
G40604 NA non-coding downstream 580582 12350850 ~ 12351728 (+)
G40643 NA non-coding downstream 751195 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 970906 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 1344625 13114893 ~ 13115253 (+)
AMCG00012848 NA other upstream 1090412 10540728 ~ 10541960 (+)
G40224 NA other upstream 1187925 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2502161 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2546672 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3062481 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 682971 12453239 ~ 12500402 (+)
G40629 NA other downstream 718307 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2658045 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 2746515 14516783 ~ 14529806 (+)
G41059 NA other downstream 2862089 14632357 ~ 14633413 (+)

Expression


Co-expression Network