AMCG00012885


Basic Information

Item Value
gene id AMCG00012885
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12235367 ~ 12242214 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012885
TTGTGTCATTTATGTTTTACAGGGGTTTGGGTGCTCTATGTTtgtgcagatgatactgaaaATTCAATTATAACAGCTGGAACTGCCACAACAGCACCTGCATCtactacaaaaaacatttcagcatcACCAAATACCTTAATGCAGTTTACAACGAAGACACCTACAGTAACTATAAGCAGCATTTCTGCTGAATCCACCACCAACAATACTGCAGAAAGTACATTTGCATCTACAAGGGAAGGCCAATCCAGTACAGCAAAACCACAACTACAGGGTACAACACTGGCTTCAAATACAGCTACAGCCACCAGTAAAGCAAAGGACAATCCTACACCAGTAACTCCTTCAACAACTCCCAATCCAAATTCAACTGATCGAAAGACAGAGACTTCACAGTCAACCTCTTTGGCTCAAGGTCAAGCTGTTGTAGCTACTGCTGTTAAAACTgcagctactactactattactaatcctagtactactattactaatccTAGTACTACTATAACTAAtcctagtactactactactaatcctagtactactactactaatcctagtactactactactaatcctAGTAATACTACAAGTAAtcctagtactactactactaagcCTAATATTGTTATCAATAATCATAGTTCTACTACTAATTATCCTAGTACTGGTAATACTAATCCCAgtactactaatattaatattaataatggtaATGTTAATTATGCTAAACCGACAGTTTCACACCCTTCACCAAAAACAACTTCTGGCAGGCAGTctactgaaacaaaaaatacagaaatatcaTCACACCCTACTTCTGGGAAGTGTGAATCTACCACTATCACAATTATTGAAAAGACATGGAAAGTTCTTCCCCTCCCCGGAGTAATGCTCTCCAAAGACTGTGAACTGAAAGACAATGATAAAGAACATGCTATTGAAGTGTGTAAGGAGCTGAAGAAACAATGTACCTTTGAAGTGAATTGCATCATGAACGTTACAAAAGTAAATGGGACACTACAGTTTTTGTCTGGGGACATTAGAGTCAGCCAAAGTCACCTGGAAAAGATCAGCCAGCAAGTGCAAAAGAGGAatgaagagaaacagaaacagcaacaGGACCTGACACTGATCGCTATTCTTGCGTCTTGCGGCGGACTCCTAATCATAATCGTTGGATTCATTATGTATATTCTCTGCCAACGGAAATCCTACCGAAAGAATCAGCAGCAACTGACTGAAGAGCTGCACACAGTGGAAAATGGCTATCATGACAACCCCACCCTGGAGGTGATGGAGATTCAGCCCGAGATGCAGGAGAAGAAGACCCACATAAACGGGGAATTCAACGACAGCTGGATAGTCCCCATCGACAATCTCATTAAGGACGACCACGATGAGGAAGAAGACACCCACCTGTAAAGCAGTGTGATCGGGGGCACGGTTGTAGGTGTGCAGAATAGACTTCATCACACTTTTGTTTGGCATTCATTTGTCCATTAGAGAATCCGATGTAGACATTCTTGGAAATATTTCAATAAGATTCTCTTtcgttttctttattatttttcttctccgACTTCAATATTTCTCCACCGCATCCTCTGCTGTCGCCACAATACGGGACGACGAAACTCGAAGAAGGTGATGATTAGTGTGACTGGATGAACTTGATCTCTCTTGCATCGCATCCTCAAACAAAACGAATGCCAACACTTACAGCACTGTTACAGACGCCAGTATATGTGATGCATCATACTGCTCTGAGGTGTTTGGCAAGAAGATGCAATTCACACATGACATCACAGACTTTCTGAACAATAGCATACCTTCCCTCTccctattttaaatgtttttcaggtGATGTTTTTTGGAATATATTTgatagaaaatgcatttttacatgaaaGCAGCATTTActtctgtgtatgtatttccaGATACCATTTTCTTCAATCTAACATATCTGTGCACATTGTATCATTACTGTCCACGTCAAAAACCTTGGCCACACATCTTGAACACAGTGATGAGGACTTCTTGTGTAAGCAACACAGGGGATTTTAGTAAGCCatcaacaacaatattaatagaccttaaacatatgtttttaggtttaggtttaggtttgtgtgtgtgcctatTTGTTACACTGGGAAAAAAGACACTAAGTAGACACAGAAATACTAAGCAGCATTGCATGGGCCCAGGGAGTGGTTTGCATCTCACTGCTTTTTTATTGCACTATGCTGCAGAAGTGATGTGTTCCCTCTGCAAAGTGTCGAGTTAGATTTCCAATGGACTGTAAAGCATGGGGTTTCTACTCTACCCTTCACATCACAGATTTACCGTAGAAGGGATGCTGCCTTCTTTCTTAATCTAGACGATCGATATACAATAACGGAGTAGCTTGTGCCTTAGAGACTATCTGCTGACGTCTGCCTCGAGTTGGCCTTCTGGCTTGGCTTGCCCCAGGCCTCTAGCTTTGCATGTGCCTGTGACTAAAGCTGGAATCTCAAAGGGTGTGCATTTCCAAACGTCACGTGTCCACTTCTGTACACGTGCATGTCACGCTTTGGAAATCTGACCAAACACGCCAGGGAACACCGTGGAGACCGGTCCATTTCTCCTTTATTGCACCCCATGTGTTCGGACTACTTGCACgtaaaagacatttaaaactcCTGAAGCCGCAATCCACAGTATTGTACGGAGAAGAcattatatatagaaaaaaaaagattcagatTTTTGTAATCtaacagtttgtatttaaaatattaagagaataccacaacaaaaataaacaatcatattcaaaataaatatttagtattaAATGAAGGATCATTGTAACGTATTTTGTACAGAatagatgaaaatgttttgttttatatatatacgtgtgtgtgtgtgtgtgtgtatatgctaTACTAGCATAAGGACAGAGGTCTGAAACACTGGAATCTGTAGTGAATACTGATTTTGACAAGGACAGGTGTCTTCATAATTTACTTGTATACCAATAAACATTTTTAGCAAAAACACA

Function

GO: NA

KEGG:

id description
K06817 PODXL; podocalyxin-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012885 True 3055 mRNA 0.40 7 12235367 12242214

Neighbor

gene id symbol gene type direction distance location
AMCG00012886 plxna4,LOC106921988 coding upstream 182254 12021466 ~ 12053113 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding upstream 226936 11963359 ~ 12008431 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding upstream 443821 11785938 ~ 11791546 (+)
AMCG00012884 NA coding upstream 465099 11632372 ~ 11770268 (+)
AMCG00012876 NA coding upstream 801848 11429966 ~ 11433519 (+)
AMCG00012892 LOC103383002,LOC106525804 coding downstream 140844 12383058 ~ 12392105 (+)
AMCG00012893 NA coding downstream 266770 12508984 ~ 12514898 (+)
AMCG00012895 NA coding downstream 275714 12517928 ~ 12553070 (+)
AMCG00012896 LOC107580939 coding downstream 351671 12593885 ~ 12609201 (+)
AMCG00012897 NA coding downstream 376553 12618767 ~ 12627577 (+)
G40571 NA non-coding upstream 40681 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 490572 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 767149 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 830011 11405005 ~ 11405356 (+)
G40496 LOC103376870 non-coding upstream 881008 11294217 ~ 11354359 (+)
G40604 NA non-coding downstream 108636 12350850 ~ 12351728 (+)
G40643 NA non-coding downstream 279249 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 498960 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 872679 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 873098 13115312 ~ 13115532 (+)
AMCG00012848 NA other upstream 1693407 10540728 ~ 10541960 (+)
G40224 NA other upstream 1790920 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3105156 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 3149667 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3665476 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 211025 12453239 ~ 12500402 (+)
G40629 NA other downstream 246361 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2186099 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 2274569 14516783 ~ 14529806 (+)
G41059 NA other downstream 2390143 14632357 ~ 14633413 (+)

Expression


Co-expression Network