AMCG00012886 (plxna4,LOC106921988)


Basic Information

Item Value
gene id AMCG00012886
gene name plxna4,LOC106921988
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12021466 ~ 12053113 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012886
GAATGTGCAGGAGAGCCTCTGTTCTCTCTGTTCTGTGCCATCAAGCAGCAGATGGAGAAAGGACCCATTGACTCTATCACTGGTGAAGCTCGCTATTCACTCAGTGAAGACAAGCTCATCAGACAGCAAATAGACTACAAGACACTGATTGTGAACTGCGTGAACCCAGACAATGAGAAGAGCCCTGAGATCCCAGTAAAGGCCCTGAACTGTGACACCATTTCCCAAGTGAAGGAGAAGATCCTCGATTCGATATACAAGAATGTGCCGTATTCCCACAGACAGAACGCATCAGACATGGATCTAgAGTGGCGCCAAGGGAGAGGAGCACGAGTTATCCTGCAAGACGAAGACGTAACTACCAAGATTGAGAACGACTGGAAGAGGCTAAATATGCTCGCACACTATCAGGTGCCAGATAACTCTGTGGTCGCCCTTGTTCCCAAGCAAGTAACAGCCTATAATTCAGTTAACAACTCCACCGTGTCCAGGACCTCAGCCAGTAAATACGAGAATATGATCCGCTACACTGGCAGCCCAGACAGCCTGCGTTCACGCACCCCAATGATAACCCCAGACCTTGAGAGTGGAGTCAAAGTATGGCACTTGGTGAAGAACCATGAGCATGGGGACCAGAAGGAAGGGGACAGGGGCAGCAAGATGGTGTCTGAGATTTATCTGACTCGACTGTTAGCCACCAAGGGCACATTACAGAAGTTTGTCGATGATCTCTTTGAGACCATTTTCAGCACAGCGCACAGAGGGAGTGCCCTGCCACTCGCCATCAAATACATGTTTGACTTCTTAGACGAGCAGGCAGACAAGCACTGCATCCACGACCCTCACGTCAGGCACACATGGAAGAGCAACTGCTTGCCCTTGAGGTTCTGGGTGAACGTGATCAAGAACCCGCAGTTCGTCTTTGACATCCACAAGAGCAGCATCACGGACGCCTGCCTGTCAGTGGTGGCACAGACCTTCATGGACTCCTGCTCAACATCTGAGCACCGGCTGGGCAAAGACTCACCCTCCAACAAGCTCCTGTATGCCAAGGACATCCCCAGCTACAAGAGCTGGGTGGAAAGGTACTACTCTGACATCAACAAGATGCCTGCCATCAGCGATCAGGATATGAATGCCTACCTAGCTGAACAGTCACGCATGCACATGAATGAGTTCAACACGATGAGCTCACTCAGCGAGATCTACTCCTATGTTGGAAAGTACAGTGAGGAGGTAAGTAGGGGGGGGGATAttcattaa

Function

symbol description
plxna4 Predicted to enable semaphorin receptor activity. Acts upstream of or within axon guidance; axonal defasciculation; and morphogenesis of a branching structure. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including basal plate midbrain region; nervous system; optic vesicle; presumptive neural retina; and trigeminal placode. Orthologous to human PLXNA4 (plexin A4).

NR:

description
PREDICTED: plexin-A4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012886 True 1263 mRNA 0.50 8 12021466 12053113

Neighbor

gene id symbol gene type direction distance location
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding upstream 13035 11963359 ~ 12008431 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding upstream 229920 11785938 ~ 11791546 (+)
AMCG00012884 NA coding upstream 251198 11632372 ~ 11770268 (+)
AMCG00012876 NA coding upstream 587947 11429966 ~ 11433519 (+)
AMCG00012870 mest coding upstream 772525 11243425 ~ 11248941 (+)
AMCG00012885 NA coding downstream 182254 12235367 ~ 12242214 (+)
AMCG00012892 LOC103383002,LOC106525804 coding downstream 329945 12383058 ~ 12392105 (+)
AMCG00012893 NA coding downstream 455871 12508984 ~ 12514898 (+)
AMCG00012895 NA coding downstream 464815 12517928 ~ 12553070 (+)
AMCG00012896 LOC107580939 coding downstream 540772 12593885 ~ 12609201 (+)
G40555 NA non-coding upstream 276671 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 553248 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 616110 11405005 ~ 11405356 (+)
G40496 LOC103376870 non-coding upstream 667107 11294217 ~ 11354359 (+)
G40436 NA non-coding upstream 862379 11103825 ~ 11159087 (+)
G40571 NA non-coding downstream 141372 12194485 ~ 12194686 (+)
G40604 NA non-coding downstream 297737 12350850 ~ 12351728 (+)
G40643 NA non-coding downstream 468350 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 688061 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 1061780 13114893 ~ 13115253 (+)
AMCG00012848 NA other upstream 1479506 10540728 ~ 10541960 (+)
G40224 NA other upstream 1577019 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2891255 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2935766 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3451575 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 400126 12453239 ~ 12500402 (+)
G40629 NA other downstream 435462 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2375200 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 2463670 14516783 ~ 14529806 (+)
G41059 NA other downstream 2579244 14632357 ~ 14633413 (+)

Expression


Co-expression Network