AMCG00012887 (plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920)


Basic Information

Item Value
gene id AMCG00012887
gene name plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 11963359 ~ 12008431 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012887
TGTGCACGGAAAGAAAACTGTGAGCGCTCCACTGAGCCCCGGAGATTTGCTTCGGATATCAAGCAGTGTGTCCGGCTCAGTGTGCATCCCAATAATATTTCAGTGTCGCAGTACAGTGTGCTCCTGATCCTGGAGGCTCACAATGTTCCTGAGCTCTCAGCTGGTGTAAACTGTACTTTTGAAGACTTGGCCGAGATGGATGGGCTGGTAGAAGGAAACAGGATAAAGTGCACCTCACCAGCGGAGAAAGAAGTGCCCCGCATCATCATAGACAAAGGAGACCATCAGATTGTTCAGCTCTACCTGAAGTCCAAGGAGACAGGGCTGGCCTTCGCCAACACAAGTTTTGTCTTTTACAACTGCAGCGTTCACAAATCCTGCCTGTCCTGTGTGCACAGCCCCTATCAGTGTCACTGGTGTAAATACAGGCACGTCTGCACCCACGACCCACGCTCCTGTTCCTTCCAAGAAGGGAGAGTCAAGCAGGCAGAGGAATGCCCCCAGCTGCTCCCCGCAGAGAAGATCCTCGTCCCAGTTGAAGTAGTGAAGCCCATCACTTTAAAGGCCAAAAACCTGCCCCAACCCCAGTCCGGCCAGCGAGGTTACGAGTGCGTCCTCAACATCCAGGGGACGGAGCAGAGGGTGCCAGCTCTGCGCTTCAATAGCTCCAGTGTCCAGTGCCAGAACACCTCTTACTTCTATGAAGGGATGGAGATTAACAGCCTCCCAGTAGAGCTCATGGTAGTGTGGAATGGTGACTTCAGCATCGACAATCCAGCAGATAACAAAGTGCACCTGTATAAATGTGGCGCCAGGCGGCAGAGCTGTGGCCTGTGTCTGAAGGCGGACCCACAGTTCGGCTGTGTGTGGTGTAAAGGGGAGGACAAGTGCACACTGAAACAGCACTGCCTACAACCAGAGAACCAGTGGCTCGAGCACTCGGGCCTCAACAGCAAATGCACCCACCCCAAAATAACCCAGATAACTCCTCTAAGAGGTCCAAGGGAAGGCGGCACACGGGTGACCATACGAGGGGAGAACCTTGGCCTGGAGTTCAGGGAGATAGAGGGACATGTCAAGGTGGCTGAGGTGGATTGTACACCAGTACCAGAGGGTTACATCCCAGCAGAGCAGATAGTGTGTGAGATGGGGAAGGCGGAGAAAAGCCAGTATGCTGGGAGTGTGGAGGTCTGCGTAGGAGAGTGCAGACCTGAATTCATGGCTACGTCctataaatattatttctttGTGGTTCCCAAGCTCCTGCACTTGAAACCTAGCCGTGGGCCCGTGTCAGGTGGCACCATTGTGAACATCACAGGAAGCAATCTTGATGCAGGAAGTAATGTATCCATCACCTTCAAGGACCAGAAGTGTATTTATCAAAGAAGGGGAGGTCAGTGGATCACGTGCAGGTCCCTGCCTTCTCTACATGGCATTGGgaatgtcagtgtgtctgtcagtgtggaCCGGGCTGGCCTCCAGAAAGACCTGAGATTTGAATATGTGGAGGATCCCACAGTCACAAAGATAGAGCCAGAATGGAGCATATTCAGTGGAAATACACCAATAACCGTGATGGGAACCAATCTGGACATCATTCAAAACCCTCATATCCGAGCAAAGTACAATGGACTGGAGACTGTCAATACGTGCAAAGTGCTCAGCTCAACATCAATGGTCTGCCAGGCGCCCGAGTTGGCCGTGAGCCCGACCCGGCAGAGTGAGGCCGTGGAGCGTCCAGACGAGTTTGGCTTCATCCTTGACAACGTCCAGTCAGTGCTGTCCTTGAACAACACCAACTTCATCTATTACCCCAATCCCATCTTTGAGACTTTGAGCTTCTCTGGGGTGCTGGAGCTAAAGCCTGGCTCACCAATCATACTGAAGGGCAGAAACTTTGTCCCGCCAGCCCCGGGGGGCAATGCCAAGCTGAACTACACTGTGCTCATCGGAGAGAAGCCCTGCACTTTGACAGTGTCTGACACACAGCTGCTGTGCGAGTCCCCCAACCTCACAGGGCGGCACAAGGTTCTGGCGCGGGTTGGTGGGATCGAGTTCTCCCCTGGCGTGGTGCACATCTCCTCGGACAGCCCCCTCAGCCACACCGCCATCATCAGCATTGCCAGCGCGGGGGGGCTGCTCATCTTCTTCATCGTGGTGGTCCTCATCGCATATAAGCGCAAGTCCCGGGAGAGCGACCTCACTCTCAAGCGGCTGCAGATGCAGATGGACAACCTGGAGTCACGCACTGATATTCATGAGCTGACCAGCGACCTGGATGGAGCCGGGATTCCCTTCCTGGATTATCGGACCTACACCATGAGGGTCCTTTTCCCTGGCATTGAAGAGCATCCTGTTCTGAGGGACCTAGAGGTTCCCGGATACCGACAGGAGCAGGTGGAAAAGGGACTGAAACTGTTTGGGCAGCTCATCAACAACAAGGTGTTTCTGTTGTCATTCATCCGCACTCTGGAGTCCCAACGCAGTTTCTCCATGAGGGACCGGGGGAATGTTGCCTCACTGATCATGACAGTTCTGCAGAGTAAACTGGAATACGCTACAGATGTGCTGAAGCAACTGCTGTCAGACCTCATTGACAAGAACCTGGAGAGTAAGAACCATCCCAAACTGCTGCTGAGA

Function

symbol description
plxna4 Predicted to enable semaphorin receptor activity. Acts upstream of or within axon guidance; axonal defasciculation; and morphogenesis of a branching structure. Predicted to be integral component of membrane. Predicted to be part of semaphorin receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including basal plate midbrain region; nervous system; optic vesicle; presumptive neural retina; and trigeminal placode. Orthologous to human PLXNA4 (plexin A4).

NR:

description
PREDICTED: plexin-A4

GO:

id name namespace
GO:0001763 morphogenesis of a branching structure biological_process
GO:0007411 axon guidance biological_process
GO:0007414 axonal defasciculation biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012887 True 2643 mRNA 0.53 17 11963359 12008431

Neighbor

gene id symbol gene type direction distance location
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding upstream 171813 11785938 ~ 11791546 (+)
AMCG00012884 NA coding upstream 193091 11632372 ~ 11770268 (+)
AMCG00012876 NA coding upstream 529840 11429966 ~ 11433519 (+)
AMCG00012870 mest coding upstream 714418 11243425 ~ 11248941 (+)
AMCG00012871 NA coding upstream 730497 11212022 ~ 11232862 (+)
AMCG00012886 plxna4,LOC106921988 coding downstream 13035 12021466 ~ 12053113 (+)
AMCG00012885 NA coding downstream 226936 12235367 ~ 12242214 (+)
AMCG00012892 LOC103383002,LOC106525804 coding downstream 374627 12383058 ~ 12392105 (+)
AMCG00012893 NA coding downstream 500553 12508984 ~ 12514898 (+)
AMCG00012895 NA coding downstream 509497 12517928 ~ 12553070 (+)
G40555 NA non-coding upstream 218564 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 495141 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 558003 11405005 ~ 11405356 (+)
G40496 LOC103376870 non-coding upstream 609000 11294217 ~ 11354359 (+)
G40436 NA non-coding upstream 804272 11103825 ~ 11159087 (+)
G40571 NA non-coding downstream 186054 12194485 ~ 12194686 (+)
G40604 NA non-coding downstream 342419 12350850 ~ 12351728 (+)
G40643 NA non-coding downstream 513032 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 732743 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 1106462 13114893 ~ 13115253 (+)
AMCG00012848 NA other upstream 1421399 10540728 ~ 10541960 (+)
G40224 NA other upstream 1518912 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 2833148 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 2877659 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3393468 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 444808 12453239 ~ 12500402 (+)
G40629 NA other downstream 480144 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2419882 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 2508352 14516783 ~ 14529806 (+)
G41059 NA other downstream 2623926 14632357 ~ 14633413 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028659 plxna4 coding NC_007115.7 CM002888.2 15217929 ~ 15420452 (-)