AMCG00012892 (LOC103383002,LOC106525804)


Basic Information

Item Value
gene id AMCG00012892
gene name LOC103383002,LOC106525804
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12383058 ~ 12392105 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012892
AGTTTAGTGTACTTTGGCCCTCCCTGCCACAGAGAAGCAGACCTCCCTGAGACACGCATGAGCAGGGTTACTCCGAAGTAATCCACAGAAGGAAGGGGGGGAAGTGGTGTTTTATTCTTCGCTGGGTTTATCCGTCAAGTGCGATTTCATGTGGGATTACCTGTAATAAAGACCAAAAGGATTTTACAAAGCATGGTGGCTTACGATGAGATCGGGAGCATCGTGCCAATTAAAAGGACTCTGCAAGACTTCCAGAATCAGTGTAGTAAAGAATCCGAGgagCCAAGCACCAAGCGTGTTCGACCTCTTGGCAGGGTGACTTCACTAGCTAACTTAATCTCTCCTGTGAAGAATGGTGCAGTTAGACGCTTTGGGCAGACAATCCAGTCCTTCTCTTTCCGGGGGGAAGGCAAATCCCCGAGTGGTGCCCAGAAGGCCTGCAGTAGAGCCGCATTGCCGACGCCACCAAAGAGGCGGAACAGCACGCTGTGGTCCGAGACGCTGGATGTAAACAAGAAAGGAACTTTTTCTGCTAAGGAAATCAAGAGGCAGGAGACTATACATGAACTGCTTCGAGGGGAACAAGATTTAATCGAAGATCTCAAGTTAGCCCGGAAGgcTTATCATGACCCAATGCTGAAGCTTTGCATCATGTCTGAGGAAGAGCTGACCCAGATCTTTGGGGACCTAGATTCCTACATCCCACTACATGAAGATCTCTTAGCACAGCTTGCAAGAGCCACAGGAACAGATGGGACAGTGGGACAAATTGGTCACATAGTCGTGAACTGGTTGCCGGGGCTCAATGCCTATAAAGACTACTGCAGCAACCAGCTGGCAGCCAAGGCGCTCCTGGACCAGAAGAAGCAGGACAGACGTGTGCAGGACTTCCTGCAGCGCTGCCTGGAGTCGCCCTTCAGCCGCAAGCTGGACCTCTGGAGCTTCCTGGACATCCCTCGTAGCCGGCTGGTCAAATACCCCCTGCTGCTGAAAGAGATCCTGAAGCACACGCCCCATGACCACGCTGACGTACACAGCCTGGAGGAAGCGATCTCCATTATCCAAGGAGTCCTCTCTGACATCAACATCAAGAAGGGCGAGTCCGAATGCCAGTATTACATCGATAAACTGGAGTATCTGGACGAGAGGCAGAGGGACCCTCTCATCGAGGTCTGCAAGACCCTGCTCTGCCACGGGGAGCTCAGGAACAAGAGTGGGAATAAACTGTACGTCTTCCTGTTCCAAGAGCTGCTGATACTGACCCGGCCGGTGACCCGCAATGAGCGCCAGTGTTACCAGGTGTACCGGCAGCCAATCCCAGTGCAGGAGCTAATACTGGAAGACCTGCAGGATGGAGACGTCAGGATGGGCGGCTCCTTCAGAGGGGCGTTCACCAATGCCGACAAAGCAAAAAATATCTTCAGGGTGCGATTTCAAGACCCGTCCCACGGCCCATCCCACACCTTACAAGTGAATGACATCTTCCACAAGCAGCAGTGGCTCAATTGCATCCGCTCAGCCATCGCCACCCAGCAGCCGCCCCCATCACCGCCGCGGGAGAGGGAGCTGCCCCAGCTCACGGAGGAAGCCGAGCTCGGGTCGCCTCCAGGCGGGAGCATCCGAATGAAGAGGCGCTCCTCCACCATCTCTGGCATTGTATACATGGAAGCGGATGAAAACACCCCGGCATCGCCTGCTGCCCAGGACCTGGCGGAAGAGACAGAAAACATACCAACTCCGGTGCCCAAGACGCCGTCACCTGTACGCAAAACGAGGAAAGACAAGTCCCACTCGTCggggaagagaaaagaaacgATGGTGTAAATAGTGGCTCGGTGGCCTCGAGAACggactgtatatttataaatgtttgttttgtttgtatacaAGCTGTGTAatgttcatgtgtttttttttagtttgtatgtattatacaaGGCAGCTACTTCAGTGCATTCAGCTCatcctgaaaatgaaaaagattcTGATTGAAAAGCTGGATACGAGAAGGGAGGGTGGATAAAGTATTCTGGGGGTATATTGGTTAATGAGGATTTTCGCTTTGTTTACCAATATACTGTCCATCTGATTTGGTATTACTCCATTGTGTAattttttatagtattttagcaaagttttagattttttttgtatatatattttttttaatattcccaAATGATTACTgtagctttttgttttggtaaaacCAGCACTGTCAATTACTATTACTCTCAAGCATTTGAGTTTGTTCACAGCACTTCTTGCTGCAGAATCCGCAAACCTCAATATTAATGATTGTCTTTAAAATCCTGAGATCAGAAGGGTTTAATTGAACACCCTCTAGATTAATTCCTTATTGTACAGATTTTATCCTGCCAGCCTCCCTAGATTTGCTGTACCAAAAGGATTTTTGTTTCTACTAAATGAAATtgtgcattttctattttttttgtaatgatcaTCAAAAATTTCTACAGAACtagtaatttcattttaaagatagtatttttttactaaaattATAAGCTGAGCCATGGTATCGAACTGCACCTTTGTCCTATATAAAGACAATGGAACACACCCTCCAATGTAGTATCTTGCatgaggatttttttgttgttatggCAAGCATGTAAATGCTTCATAGTGTGAAACTACTGAAGAAGAGCTGCCTTTGTAAATAATTAGAAGATGGAAAGCGCATGTTGTCGAAGGTTTGAGGTCAAGTGATCAGAAAGAAATTGGAAGAGATGCTGAAAGTCTGATGGTTGGGCATATTGAGCAAGGTGTGTACTGTAATTGTCATCTATGACGCAACTTACCTGGTACCTGCTCACATGATTGATTTTCCCCTTTGTTAGaaacagggggtgggggggtggatatGGATACGTattgaaaaaaattgaaagtacAGTGTATGTAGGGAAGATGAGAAGAGGGCAGAACGAAGTGGAATGTGGACTACTGTAAAACAATACTCGAATGGAATGAGTTTGAAGTGGCTGTGCTCTGTATGTGGTGTACAATATCAGATGgcaaagaacaataaaaaaaactgtgtaaGGTTTGCTTCCCACTCCTGACTTGCTTTTTTTGAGTTTCTCTGGACGTATCCTTGAAAGGGAtggaaaataattgttaaaatagACAAGTGTAATTCTAGagcagcttttgttttgttttgtaaactaATGACTACCACCCTCCACTCCTTCAGCCTTTGGGATTGAGATTGCTTCtgcagttttgcttttcaaaatcgGAGAATGAAGTCTGTGAAAGAGCTAAGATCTTTGAAAACCCTTTTTCTACACTCAGTGTAGCACATGGCACTGTTGTTATGCCAAAGAAACTTGATTTCCAAACATGAAAACCACTGTCCAAGTATGTTGGATGACTAACTTAAGATATACTCTAGTAGACTTGAAATGTCTACCTTCATCATAATTGCTAGACGAAAATCAAGAAATGTTCCTAGAAGTGACccgattaaataaatattccttACCCGTGCTGAAAAATGTCCACTGAtctatgaaataaattatttcctaCACTTCAAAGCATGGGGTTTCGTGACGGTTAGTGTTAGTTCAGGCTCACGAGGTGTATTGAAACCTGTTTTTCATCACATTGTTCTGAGATATTACCACGTGTCTAGCGtgggttttaaaaacataaatgtatgaaGTCACAAATTGTTAGATCTTAGCAGGTGGGAAAGGGG

Function

NR:

description
PREDICTED: neuroepithelial cell-transforming gene 1 protein-like

GO:      GO:0005089,GO:0032319

KEGG:

id description
K20683 ARHGEF3_8; Rho guanine nucleotide exchange factor 3/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012892 True 3733 mRNA 0.45 10 12383058 12392105

Neighbor

gene id symbol gene type direction distance location
AMCG00012885 NA coding upstream 140844 12235367 ~ 12242214 (+)
AMCG00012886 plxna4,LOC106921988 coding upstream 329945 12021466 ~ 12053113 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding upstream 374627 11963359 ~ 12008431 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding upstream 591512 11785938 ~ 11791546 (+)
AMCG00012884 NA coding upstream 612790 11632372 ~ 11770268 (+)
AMCG00012893 NA coding downstream 116879 12508984 ~ 12514898 (+)
AMCG00012895 NA coding downstream 125823 12517928 ~ 12553070 (+)
AMCG00012896 LOC107580939 coding downstream 201780 12593885 ~ 12609201 (+)
AMCG00012897 NA coding downstream 226662 12618767 ~ 12627577 (+)
AMCG00012900 NA coding downstream 448136 12840241 ~ 12867057 (+)
G40604 NA non-coding upstream 31330 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 188372 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 638263 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 914840 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 977702 11405005 ~ 11405356 (+)
G40643 NA non-coding downstream 129358 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 349069 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 722788 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 723207 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 868539 13260644 ~ 13261179 (+)
AMCG00012848 NA other upstream 1841098 10540728 ~ 10541960 (+)
G40224 NA other upstream 1938611 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3252847 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 3297358 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3813167 8536233 ~ 8569891 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other downstream 61134 12453239 ~ 12500402 (+)
G40629 NA other downstream 96470 12488575 ~ 12535929 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 2036208 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 2124678 14516783 ~ 14529806 (+)
G41059 NA other downstream 2240252 14632357 ~ 14633413 (+)

Expression


Co-expression Network