AMCG00012894 (gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239)


Basic Information

Item Value
gene id AMCG00012894
gene name gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12453239 ~ 12500402 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012894
ATGGGAAATGAGAATAACGACATATTGCCATCTAAAGCAGGTCTCTTGGAATGTGTACTGCCTGGGACAGGTGCCTTTGAAGAGAAGATTCTTCCTTTACTTCAAAATTCGTACATGTACCCAGAGTCTGTAAGGTGTTTCAGATACAGCACTTCATATCTCATAAAAAACAAAGGCCTTCTGGAAAAGtaccACACCAGCTGTAGAGAAAAGAAGGATAGAGGATATAAGGATGAAGAACTGGAAGAATCCTTTGGTTTCCTCCTGTGTGACAGTGAAGATAAGgcaaaactgctctCTGAAACCGGTTTACAAGTTGGACATAGTACATGCTCTACACTGGGTGATCCTTCAAAAGgTGTTTATATCTCCAAGTACTCAGATTGCCTGCACTTCAACCCATGGTACCATGGAAAGTCTGGCTACATTGCTATTTTCAGACTCATTAAGGGGCGAGTAAAAGCAATGGCGGAAAATTACACTCAGAATTTTACGCAACCATCCGCTGACTATGACTGCCACATTTCTGAACATATTAATACAGTCTCTTCAACTACCAGTTCTTTTCAAGCTTATGAACGCACTCAGTATTACTTGTATGAGCTGCAGAAAGGAGCTGCTGCTTCCTGCCCCAGACATGTCTGTCCCTTCGCCATTGTAGGCTTCTCATACGGGGAATCCAAACCTACTACGTCGAAAGTGTTAGCCGAAAAAAGTGGCAGTTCAGACAAACCAGTTTCCCATTATTTTCCATGGAAAGGCCAGATCCAAACCAGCGACAACTCCTTAGTGTATCATGTTTCTCTCCAGTCAAGCAGTGCAATCATCCCAGCCAAGCTACCAGAGCGTTTGAAAGTGGACAATGTTATGACCGTCTCTGATCTGAAGACAGCATTGCCACGGTCAGTCTTTGAAACCAGCTTTGCAAGTGAAGATGGAGTTTATTGCAGTTTGTATGATGTGGTACCAGTATCAGAAGAGTACTGCCCCCTTCACCTCATGATTGAAGAGCTGATAGAAAAAGACTTGGTATTCATACTACCACTTAATGATTCTGGTTTCCTTATATTGTTACCTTCTTCTTGTTTCCTCACATACGAAGatACAAAGTGTCAGAAGTCCGAATTGCCGATTTCCTCTGAAGTAATGCAAGTCCTGCCTGGACTGAACTATGCAGTGATGGTAGCTGAAAAATTCCAGTCAGATCACAAAGGGTCACCTTCTAGCTTGGTGGAGCAGCACTTGCATAACTATGTTACATTGACCCAGCCAGGCATCAGTGACAGTCCATTGAAAGAAGCCATTGTCTTAACTGAGCAGTACGACGTGTCCAGAGTTTATAAACACCTGTACACAACTGCAAAATGTCCCAAAACGACCATTTCCCAATTAGAGTCCTATTTGAGCAAGCCAGATACGTATATCCTACCGGTATCAAAAGCTGTCGAGCTGCTGGCTGTGAACCAGGATGATTCTGTGGCAGAGGATGCAGAAGATGACTGCGAGAACGTGTACTACACTCTCTCGTCTCCAGAGACTTTGCACCCCGAGTTCTGGAGTGATGGCGACTCGATTGGGGAAACAAGAAGCATGGAGTTCAAGGAAGGAGTTCCCACAGAACCTACCGCTTCCGCAGATGTAGTGGAATACAAGACGAAAAAGCAGGAAGCCATGGAGAGGTTTACCGAGGGTGTGGTTGCGCTGGAGAGCAACGGGAAGAAGAGCAACATGGTCAGTTTTGCCTCTCAGACTAATCAGACATTAAATACTCCAACTAAACCTATATCGGGCGACATGCCTACAGACTGTGTCATGGATGTCCCAGGGAAGAGAGAGGATTTAGCCAATGCCAATGAGCAGGTTAATGTGACTGAGGGAAAGACACCCACCATGCCAACCCCAGGTGTCAAAGTGGTGGGGAATTGCAGTGACGCACATGATCAGAGAGACGACCTCCTATTGAGAGATAGATTTCTCGTGCCTGATACTCAAAGAGGGAACAGCCCAACCCCAACACCTTCCTCTGAGAGAATCACCAGAAGCAGCAGCAAAAGGACCTTGAATACTGCTGATCAATCGATCATTGAAAACGATCCCAAGGAGAATGCTGCTGATTGTGAGCCACATACAcccaaaagaaaaattaaatgtgacaATAGCTATGGATTGAAAAACATCATCACTGACTGTGGCAAGATTTTCATTCCTCATGGCTCAAGCTTCTTGATGGGAGACTTGAAATCCCTAATGCAAGCGAGCAAACCCTCAGTGGAGGTGAGCACTGGATGCAGCGAAGAAGAAATGGTTACTTGTGTAGCAGATTCTACTCAACTTACAGGGATGGCTTCAGCAGACTCTGGGAAAATAGGATATGCAGGAGGTTCAAGTGAGCCTGGTGAGAATAAAGTAAGTGAGGTTAAAGGGGACTCATTGATTGAGTGCATCAAAGACAAGGAGGTGGTGGAAGCTCTGAAGACTAACAGCAAAGCTAATGCATGTGCAGGCaagggaaagaggaaaaaacCTTTGTCCCCATTGAGTCAGAAGGCCAGCACAGTGGATCCCAAAGAGACAACCGTTGTTGGTAAACCAGGCCCTCAGAAAAAGAAACGTAAGCGCAATATTAACGTGGAAGAGGAGTTGGAGAACGTGAGCTTGAACAACGGAAACCCTGTTGCTTCGACTGACACGAACGTGCGACACAGTGATTCAAGGGTAGCTGAGCAAACCTCCAAACTGGAAGAATGTGCTAAGCCAAAAATACGTCAAAGAAAAAAGACTGCTAAGGCACTGGATCTCTCCAAGCTTGTGGTCACAACGGAAGATGCGTTACAGACGCCTAAAAGCATGACACCGCAGAGTATCCAAGAAGTCAAACAACAGAAGATTGTGAAACCGTTTAAGAAACGAATGAAGAACAGGATACCTGAGTGTATGAAAGAGAATGGGTGCTTGAATTTTGACACACCAGCTTCATTTGACACTGAAAATATAGCAAAAACTCAGTCAAAGGAACTCAAAGCTTCTGCTTGTAGGGATCTGGTGCAAAGGGAGAATACGAGCCATGATATGGGAAGTGCAAGTATTTGCGAGTCCTCGGACGCACTGACCTTACTGGCCGACTTAGCCCTTAGCTCGAACGATAACCTTTCGGTTCAAGTGGGACAGTCTCAGAGTGTAGTGCCAGAGTCTGAAACAGAATCTGGGCAGACACACGGGGATGAGAATGGAACTGTCCTTCAATCTGTGCTACGAAATCCCACAGGGTATAAACTCCCCCAATCACCACATCCTGAGGGACTTAGAGTGACTGGAGAACTGATTCTTGGTGTTATTTCTAAAGAGCATTCTTACTCATTGCCCCCATCATATCTGCTGTTGGGTTTGGCAGGTGCGCCTCCTTTGGTTTCCACAGATCGGACCGAGTCAACTCGAAGCCACACCCCCAAGGAGGATGATGGTGTTTTAGGCAGAAGAGCTTTTCAGTTCAGATACAAGGAGGCACACTGTCAGGAAAAAAACGGGCAAGTCGCAAGCGTTTCAGATACCCCCCAGGGATTTCTAGGTGGCCCCAGTGCATGCCACCCCCGTCTCCTGACTGAAGAGAACGGAGTACTCCAGGTGACAAGGGTGTGGAAAGAGAAATATGAGTTCAATTTGGACAGCAAATACACCAACGATCCGCTGGATAAAACCATTTCGCGGGCGCTTCATGGCATTGAGGAAACTCTTGAGCAAGTGCATCTCATCCTTCACATGTGGATAGGTCTGTTTTACAGCAGGTCCACAATGCGGTTCTTTCAGACTGACCTTGACGTTCCTGAAAGCAGCGAACAACCCAGCAGCGCCCCTAAGTCTTCATTGGACAGGGATCCCTCGCAGAACATCCTGCCTGCCAGCTGTGGCCAAGAACAGATCACTTTCCAGATACCGCCGTCTGTCATTCAAACCGTTTCACACCAACCGCAAACGGAACTGTTAGATGTTACGgaaaaaagcaagaaagcatTAAATTGCCCTCTAGCCAGGGACGGTGCAATCAACCTCTCGGAATCACTCTCCGAAGCTTTGGATCTTAGCATCGCGAAATGCACAAGAGAGCTCCTGCCGTGTGTTCCCAATGACCCCGAGCAACCTGTAGCTCCAGAAAGGAGCGACGCCTCACCTCACAATCAAAGAGATGCATGGCCAGAAACCAAGAAGCCCTCAGATGCACCTGAAAGCTCGTCCGCAGAAGAAGATGAGTttatcagggaggcatctgaggCGATGGAATCAACGGACAATGACCGCACCACAGAGGATCGGCTGTGCGGGGAACACGAAGGAGAGGTCACCGTCAAACAGCCAGAGGTGGGTCTATTACAGCGTGGGAACAACGAGGAGAGAAATGAAACATGTAGGTCACCAGAGAAACGCACAGAAGATGCTGCTGAAGTGACATCTACTGAAACAGATCTGTTAACGGACCAGACTGACCATTATGAAGACGACGAGGAAGCTGCGGAAAAGGAGAGAGTCCCACTCGACCTTTCCTATGACGCAAATGTTTATGCCAGAGTTCAGAAAACTGCAGACATCAGAGACCTTGACTGTGTAGGTCAGGCTCATGAAACTGAAACACCTATGACTTTTGCTGACATAGAAGGAGGAGATCAAGAATCTGCCAGGGGGCAGGAGGAACACACTGGGGCAGACTGCTCACATTTCCCTTCCACTGTCACATTGTACGACTGCTGGGGAAAGCAAAAATTCTGTGCGAACTATCCAGTCGTTAAGCCAATCCCGATCGTGCCTTCGAGGACAATTCGGAACACAACGAGGGAAGATTGTTGCATCCAGAGCTTCTGGGAAAAGTGGAAGGAGCTGCATGTCACAAAGCCTGACTTAACGCAGGCTTCTTTGGATATGGAGTATTTGATATTTTCTGAAAAGATGAagcacattcttaaaaagaacaaGGGCTTTCGCAGATCTTCACAGAAGTCATGGAGCAGCTCATCCTCAGAGAACGCATCTGGCATCAGCCCGATCATGGTCAGATTTTCCAGTTTAGAGGATGTTCCCGATAATGCCTGTAACACCGTCCTTCCTCTGGTCTGCCAAAAGGTTAAAGTGGACATGCTCCAAGGAGAAAATGTAGAAGAAGCTGAGAGCACACGCAAGATTTCTTTGTCTAGTCAGCAGCCTCTCCGTCTTACGAAATTGTCTTACGTCAATGGTATTGAAGGACAGCATACAGACATTTCTGACATTGCATCTAAATGTGCTAAATCTTACGCATCCATCATAGATGGTGTTTGCTCTGGTGCTGACATTCTCAAACAAAGCATGGCCGAAAGGCAGAAGAGGGATATGGACTTACTGCACAACACATCCAAGACAATTGACTTTTTTCATAATCTTAAACATGATATGTACGACTATCTGCAAAATAATCTGAACTCTGTAGTTAGACAGTCTTTTAAGACAAAGTTCTGCTTCTACATCATCGAAACACAAGTGGATGCTTTCTTCAAAAACACCAAGGAGATGCTAAAGGCGGAAGGCCATGTGGAAGTCCAGCCAGCCCAATTCGATCAGCTGGATCAGTGTCCTTCATCCCCCCTGCTGATTATCATCAGGAATAAGGACATCTTGGCGCACGTGTGCAAAATTCCTCACTTGCTGGAGCTGAAGAAGATGCCAAATGTCCTGTTTGCAGGAGTGGACTGCCCTGACGACGTTGTGAACTTCACCTACCAGGAGCTCTTCACTAGAGGGGGGTTCGTGGTCTGTGATGGTGCAGTGCTGGAGACACTGACTCTAGCCTTTGTGCCAGAATTGTGGGGGCCTGGGAAGTGCCCTCAAATGACTGGTCTGGAAAAGTATATTGACTTGCAATGGAACATCAAACTTAACACTATAAACCAGAGCTTCTTTTTGGTAAACCCTTCAGATAATGTCAAGAAGCTGAAACACCTGATTGACTGCTGTCACGAGGCGGGCATCGTGGAGGTCCTGCCGTACCACGAGTGCGACTGTCTCTCCCAGGAGCGGCCCGACTACTTCAGCTGCCTGCTGCGCCTGCAGGTCCAGCACGTCACGGCTAGGTTTGCCGTCTTCATCACGGATGACCCTGATCACCTGACCCACTTTCGTCACCCGGTCACTGATGTAGCTGGGGTCACAGATCAGCTGCTTACAGCGGGCAATCTGGCAGACGAAGCTGCCCTCGATCACCTTGAAGTCCAGagagaaaataaatacttcctCAAATTCACAGTAAGCTGCAGCAAACACTCCATTCAGATTTTCCTGATTGAAGATACTCCCATTTACAACGGCTTAAACTGCTGCCTGTACGAAGTGCTGGAG
>TU50632
agtaccACACCAGCTGTAGAGAAAAGAAGGATAGAGGATATAAGGATGAAGAACTGGAAGAATCCTTTGGTTTCCTCCTGTGTGACAGTGAAGATAAGgcaaaactgctctCTGAAACCGGTTTACAAGTTGGACATAGTACATGCTCTACACTGGGTGATCCTTCAAAAGATAGAAACAAGACCAAGAGAATGTAAGGCCCAGA
>TU50637
aaaaaacaacaaaaagtcaGTTGACTCAATGTGACAGCATATCTAAAATAGTTCATGTGAAGCAATGGAATCATGTATAGAGCACATACTTCTGTTCAACCGGCTCCAGCAGGTCCAGAGCAGGCTTGATCTCTTTCTCTGGGTCACTGGTCTCCACTGTAGTGCTCACGATGGCAATGTACTTTCCTTGTGCGGCGACATTGTGAGCATAGGAAATCATGCACACGTAGAACCAGATTTCCTGTTGACTTGGTTCTGTGGAATGATGATCTGGCATGAGTTGGCATCGTTGGTGCTTTTGATGGGGTGGTTCATGATGCAGATGACCCTGATCACCTGACCCACTTTCGTCACCCGGTCACTGATGTAGCTGGGGTCACAGATCAGCTGCTTACAGCGGGCAATCTGGCAGGTATGAACAAGAGGGTCTCCATTAACTC
>TU50641
acacacaaaccCAAAGCAAGGTGTGTACTCACTCATCAGTCCTGTACAGAGCGAGTGCGTGGCCTGTGAAATCAATGACATCCTGGCCCAGGTCGAACTTCTTGTAAACATCTCGCATTGTGCTCTTCTTTGGATCAACACCCTCTAAGGTTTTAGGGTCATTCTCATCGAAGTTGGCAACAAACACTAAGAACTTTCGGAACCGTCGTTTCTCAAAGAGGCCCATCAGATCTAAAATGGAGGACAGGGCTTCTGTTTCAGTGGAAGGGACCTTGTAAATCTTCCCTCCTTTGTAGACGAAGCTGCCCTCGATCACCTTGAAGTCCAGGTAACGAGTCACTTGAGTGATCAGCAACATCCTAACAAGCTGACCATTGGCCATGAGAAACTTGGGGATAAGGTCTACATTCCAATCTCTCCCCTTTCCCATGGACTCCGGGGGGTTTCCAGGGAGGCTGAATCTTTTGTAGAGATCTTCCAGAGGCGTGATGGAAGCACTCTCCCCCCCATAGTACGAGTTGCGATCCATGTGAAGCACCTTCTTCCCCTTCACCGACATGATGCCCGAGAGGATGCATTCTGAGTCCGGTCCCCAAGACGATTACATCAtattcttcattcatttttccttctgttttctcTCGTTTTCCCCCACTCCGTAAAGGCTCGCTCGGTAGAAAATGGAGAACAGTGAAGCTGGGAAGTGAAAGGACTCGCTCGACGTCAAGCAATTCCGCCCGGCCGCAGGGGGAGGAGCCAGCGACCTGTCACTCACAGCCGCCCGAGCACAGGCTGTGTTTAGGGATGTGGCCGGGAGGGGGGATTTGCATCAAGTTGCAAAGTGGTATAAACGCATGAAGTAACGTTCAAGTGCACTGTACCTTGCAACCAATCCAAGCCGAAAAATGCAGAGTGTAGCCGGTTGTGTAATTGCGCATTTGATGTATGTGCATTGAGAGCAGTCTGTATGAAG

Function

symbol description
gdi2 Predicted to enable Rab GDP-dissociation inhibitor activity. Predicted to be involved in vesicle-mediated transport. Predicted to act upstream of or within protein transport and small GTPase mediated signal transduction. Predicted to be active in cytoplasm. Orthologous to human GDI2 (GDP dissociation inhibitor 2).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012894 True 6357 mRNA 0.47 23 12453239 12497997
TU50632 False 205 lncRNA 0.42 3 12456548 12457730
TU50637 False 440 TUCP 0.47 2 12489799 12490422
TU50641 False 973 lncRNA 0.50 5 12491549 12500402

Neighbor

gene id symbol gene type direction distance location
AMCG00012892 LOC103383002,LOC106525804 coding upstream 61134 12383058 ~ 12392105 (+)
AMCG00012885 NA coding upstream 211025 12235367 ~ 12242214 (+)
AMCG00012886 plxna4,LOC106921988 coding upstream 400126 12021466 ~ 12053113 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding upstream 444808 11963359 ~ 12008431 (+)
AMCG00012883 plxna4,LOC107592200,LOC107676920,LOC107725603,LOC107555548,LOC107729844 coding upstream 661693 11785938 ~ 11791546 (+)
AMCG00012893 NA coding downstream 8582 12508984 ~ 12514898 (+)
AMCG00012895 NA coding downstream 17526 12517928 ~ 12553070 (+)
AMCG00012896 LOC107580939 coding downstream 93483 12593885 ~ 12609201 (+)
AMCG00012897 NA coding downstream 118365 12618767 ~ 12627577 (+)
AMCG00012900 NA coding downstream 339839 12840241 ~ 12867057 (+)
G40604 NA non-coding upstream 101511 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 258553 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 708444 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 985021 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 1047883 11405005 ~ 11405356 (+)
G40643 NA non-coding downstream 21061 12521463 ~ 12521819 (+)
G40710 NA non-coding downstream 240772 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 614491 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 614910 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 760242 13260644 ~ 13261179 (+)
AMCG00012848 NA other upstream 1911279 10540728 ~ 10541960 (+)
G40224 NA other upstream 2008792 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3323028 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 3367539 9083662 ~ 9085700 (+)
AMCG00012803 sult4a1,LOC102784496,LOC106576158 other upstream 3883348 8536233 ~ 8569891 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1927911 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 2016381 14516783 ~ 14529806 (+)
G41059 NA other downstream 2131955 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 2581017 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2797560 15297962 ~ 15317344 (+)

Expression


Co-expression Network