AMCG00012895


Basic Information

Item Value
gene id AMCG00012895
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12517928 ~ 12553070 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012895
cAACGTCCTTCGCAGCCCTGTTTTGTCACAACGTTTTAACAATCTTTCTCAATGTGGTGATGTGGCCACAACCCAGTTTAATTAACCGGGATGATGATTAAGGAAGGCAACAGCAAACGAGTCCATGTCTTTACCGCATTTCTGCTGGGGACTGTGAACAGCAAGTGACCAAGCTGAACAGTTTTTTCGACATCTACACAAAGACACACCAACTTGCGTAGAGACCAGAGGCAGCATTCAATATGGACAGTCATGATGAACAAAAGCCAAGGCTTTTGAAAAAGCCATATTGGTATCAGAGCTCATCGGGCAGGGAGAATGATGAAGAGGAgccaaaagagaagaaaagagttATGTCATCCTCACCAATGACCATTGAACATAGTTTGGTAGCAGCTCTGTCAGCACCTGCATCTTTCTCTGAATTTGTCTCCCAAAGAAATGAAAATTTGCAGAATCAGGTGCTACTCAAACTGGACACCATTTTGGAAAACCAGGCAGAGCAGCTGTGTCTTCTACGGACACTTGTAAGGAGAAGTGCTGTAAATAATGATCTGGAGGATGTCCTCCCCACCCCAATCAGTGTGACAGAGGAACTTGATGAACTTTGCCACAGGATCAGCACAGATAACAggttcaaaaagaaaatgATATCCTGTCTGTGTTGTCTGGGAGGACGTAATGTTGGAGACAGCATCCGCCGAATGATGAGAAGGCTGGGCACCAATGCGCTGTGGTCAAAATACAGCCTCAAAGGCAGAAAGGGGAAGATGGCTCTTATAGAGCTATCACTGTTCATGGTCTTGACTAGGAAGGCCAAAAGAAGACATCTGAATGCTCATGACTGTGAGGCCCTTTGTCACAGTCCCTCGCTCTCCCAGCCATTCGCTGTCTGTCGCACCAGTAAGGATTTAAACAGGGGGCTCTACCCAAGGACTGCAACCCAGAGAAGGCAGAGAGGGTCAAATGTCCGCTTGAACCAGACTGGCATTACTGAGTACTTCCCTGTCACAGGTCGCTGCAAGGTGAGCCCTCAAAAGATGGCCGAGTTTGTGAAGATGGAGGAGGGTGCTGATGGAGAAGCTGTCACTGAAGAGGAGAAGTGGGATTACGTCCCCGACAACTTCTTCTCGGAAGAATTTGAGGAGGAGTCGGCTGTCGTAGAGCCTGGTCTGAGATGCAGCCGGAAGCGCTCCTCAGACTGTCTGGGGAAGGATTCTCCGGGTGGCGGCTGCAGCGATTGGACTTGGCTGCCCAAGCAAGAGCACATGGCCCCTGGTCACCTTGAACATTGTCCTCCtaagcaggaggaggaggacataCCTGTAGATGTTTTCCCTGATGCCTGTTATGGACTCCTGGGGAGCAGCAATTGTAAACAGGAGCCTTGTGGACACATTACAAACCTACCTGAGGAGATTCTGATGGTTATTTTCCAACACCTTCCTGCCGAGGACCTCTTTCTGCACATCAGCCTGGTCTGCCATTACTGGAGAACCATAGTACTCGACCCATTGTTTGTACCATGGAAAAAGCTCTACTACCAGTACAGGAAAGGAATGCGCCAGGCAGTGGAAAAGGCTAATGCAATCCTCTCGAACAATGGAATCACTGCCCATGAGAACCTGTGTCTGTTGAACCTGCTCGAGTACATGTCAACATATAAACACAGTCGGAACACCCAACCGGACAGAGTGCTCAGTTGTTTGAAAAAGCACCCTTTGTACTCTCAGGCTGAGATGTGTATAAAACTCAGATTACCAGAattagaaaaaaagaacaagCACATAGATGCCTGGGCTGCCTTGACTGTCGTGGTGCTTCTGTCGCACACTGTGAAGGACATCCAGACCCTGGTATCCTGCCTGAGGAGGCCAAGTTCCTCGCTGTCCCTCTCTGAGATCTCTGAGGCACTGTACTGCATTGCAACTCTACTCTTTGCCATGAGGGAGATTGGAATTAACATCAGCACCAGGTTgcattacaatttgttttatgttcttcATCTGCTGGAGAACTGTCCTACCTCCTCTGAAActgtggaaactgaaaataaggAAGAAGATGGAAACTGTGCACCTAACCAGGCTAGCTTTGTTGATTTCAGAGTGACTCCTGTGGCAAAACTTAATCTCACTCATGAACAGCAGCAGATACTGAATCACGATATTGACTCTGGACACGTTGTCAAGATCATTGCATTTGCAGGCACTGGGAAGACATCCACTCTCATAAAATATGCCGAGCAAAGGCCTCAGCTGCGTTTTCTGTATGCTGCTTTTAACAAGTCAGTTGCTGTCCAGGCTTCAAAAGACTTCCCTAAGAATGTGGACTGCAAGACCATCCACTCCTTGGCCTACAGAGAAGTTGGGAGCAAGTATCAGAGAATGAAGAAGCTGAACACCAGTAGACTGAGTCCGTTCACAGTGGCCTGGATTCTGCCAAAGGGCAGGGGCGGCTTTGCAAGAGCCAAGCTTGTCACTCAGACTCTCAATACCTTCTTCGCCTCTGCAGATGACTACATTACCACAGACCATGTGCCACTGCGATACAAAAACACGCATGGGCATAATGTTCCAGTGGAGCCTACCGAAAAACTGAAAATTGTAGATGATTCTGCTAACATCTGGGAGAAgatgaaacaattaaaaccaaCAAGGGAAAATGGTCATTGCATGACTCATGatgGATATTTGAAACTTTGGCAGCTCCAGAGACCTCGTCTTGACAGATATGATGCTATCTTTATTGACGAAGCTCAAGATTGCACTCCagCCATCATGGATATCGTGCTGTCTCAGTCTTGTGGGAAAATCTTGGTCGGAGACCCTCACCAGCAGATCTATACCTTCAGAGGTGCCATCAATGCCTTGCATGAAgtgccccacacacacatttactacCTCACACAGAGCTTTAGATTTGGCCCCGAAATAGCTTACATTGGAGCCACGATACTAGATGTTtgcaaaaaagtgaagaaaactCTGGTTGGTGGAAGACAGGAGGGGAACGTCACAGGACACAAAGAGGGGAAGGTCGCAATCTTATGCCGCTCCAACACAACCGTGTTTGATGAAGCTGTGAGAGTAACGGAAAGCAATCCACCCCCAAAAATTCACATTGTGGGAGGCATTGAACATTTTGGACTTAGAAAGATTTTAGATATCTGGATTCTTCTGCAACCTGAACAAGACCGCAAACAAAAAAACCTAGAAATTGTCGACAAGTTCATCAAGAATTTCTGTCGAGACTCTTTGGGAGGCTACAAGGGACTGAAGAAATACGCTTCTACAGCAGAGGACTGTGAACTGGAGGGAAAGATTGCATTGGTTGAAAAGTACAACATTCGTATCCCGGAGCTGATAAAAAGGATATTCGAGTGCTCTGTGTCCGACCAAGCTTTTGCAGattttatCATGGGAACGGTTCACAAAGCCAAAGGACTGGAATTTGACACTGTGGTAGTCACAGATGACTTCACCAAAATCCCCTGCGCAAGGCACAATCTCCAGCGCCTGCCCAGATTCGGTGATGGGTCCGTTCCTGACGATGAGTGGAACTTGCTGTACGTTGCAGTGACTCGGGCGAGGAAGAGCTTGGTGTTGACCAAGTCTATTGAGAACATCCTCACACTAGCAGGGGAGTACTTCCTGAGGTCAGAACTCACCAGTAACCTCCTTCAGGACGGCCGACTCCCTGACTGCACTGTGCGGGAGTGTCAGAACAGCGTGAGAGGGGAGTCGGTCCTCACAATGCAGAAAATACCTATCAAATATAGTGACAGAGAAGATGCGGGTGGACCTTTTTGTACTACTTGCGTTGAGCAGCGTCTGGGGCCCATGGCATATTTGATTGGCCCACCCGATCTTGTGACATCGATGCCCTATACAGAAGAACACGTGGCCCTCCCAGTAAACATTGCCCTGTTGCTTGCTCTCTTTTGAGGACCATGTCGGTAAAAGCACAGATTTATTACTTGAAATATTTGGACTGAACCCCTTTGGTTTTATgcctttttgtttctgaatgcCACCTTGGCTgagaaactttattttattttacttttatatatgaAATCAAACTGCAAACAAAGCTGTAGCCTCTGCAAATATTGTGTTAACATGTTGAACAGTCATACgatttttcatatatacatatttgtttccgGTATATACTTCGGTACACAAAAATCATGCTCTTCTGGATTTTGGAACTGGAACCCATTATGGCAATGAAAAGGTGTATAAGGTTTTAtacaaaactttatttttgatGTACATACACTTACCTGTGATTCAGTTACCTGTGCTCAAAAATCTTACACTTCcatacaggttttaaaaaaaatacagtttacttACAACTTTTAGCTCTgcttactgttgtgtttttttgtttgttggtttgttttaagaCCCCTTTTTTAATCCATCTTGAGTAATTTATCTTcatccagaaaaaaaatgtattttgtttttgctttacatGCATATGTATGTTCTTGAAGTGTACATGTATAATAATCCATATAATAAACCAGTGCAGTGAGTTTTCTCAGTCTTCTGGGACATGGTACTGTACTTCAGAAAAACCTTAA

Function

GO: NA

KEGG:

id description
K10300 FBXO18; F-box protein, helicase, 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012895 True 4600 mRNA 0.45 25 12517928 12553070

Neighbor

gene id symbol gene type direction distance location
AMCG00012893 NA coding upstream 3030 12508984 ~ 12514898 (+)
AMCG00012892 LOC103383002,LOC106525804 coding upstream 125823 12383058 ~ 12392105 (+)
AMCG00012885 NA coding upstream 275714 12235367 ~ 12242214 (+)
AMCG00012886 plxna4,LOC106921988 coding upstream 464815 12021466 ~ 12053113 (+)
AMCG00012887 plxna4,LOC107555548,LOC107592200,LOC107729844,LOC107690636,LOC107725603,LOC107676920 coding upstream 509497 11963359 ~ 12008431 (+)
AMCG00012896 LOC107580939 coding downstream 40815 12593885 ~ 12609201 (+)
AMCG00012897 NA coding downstream 65697 12618767 ~ 12627577 (+)
AMCG00012900 NA coding downstream 287171 12840241 ~ 12867057 (+)
AMCG00012904 NA coding downstream 331419 12884489 ~ 12901327 (+)
AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding downstream 353315 12906385 ~ 12916433 (+)
G40604 NA non-coding upstream 166200 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 323242 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 773133 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 1049710 11466221 ~ 11468218 (+)
G40498 NA non-coding upstream 1112572 11405005 ~ 11405356 (+)
G40710 NA non-coding downstream 188104 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 561823 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 562242 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 707574 13260644 ~ 13261179 (+)
G40824 NA non-coding downstream 1330191 13883261 ~ 13885189 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 17526 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 1975968 10540728 ~ 10541960 (+)
G40224 NA other upstream 2073481 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3387717 9112460 ~ 9130211 (+)
AMCG00012818 NA other upstream 3432228 9083662 ~ 9085700 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1875243 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1963713 14516783 ~ 14529806 (+)
G41059 NA other downstream 2079287 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 2528349 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2744892 15297962 ~ 15317344 (+)

Expression


Co-expression Network