AMCG00012896 (LOC107580939)


Basic Information

Item Value
gene id AMCG00012896
gene name LOC107580939
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12593885 ~ 12609201 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012896
TTTTGTCATTTCTGTGGTTGTAAGTGTGggcattttcttattttctatttacagcagaagaaatacatgttttcgtATTACAACATTGCATGGTTTTTTTTTGGATTAAATCAGGCATTTCCCTAAACTACAGGAACATGTCACTTTATGATGATCTGGGTGTTGAGACCAGTGACACAAAAACTGAGGGCTGGTCCAAGAATTTTAAGCTGCTTCAGTCTCAGCTGCAAGTGAAGAAAGCAGCGCTCACTCAGGCAAAGAGTCAGCGTACAAAGCAGACTACAGTTTTAGCCCCCGTGATCGATCTGAAGAGAGGAAGCTCCAGTGATGACAGGCAGATCTCAGACACACCTCCCCATGTGGCAGCAGGACTGAAGgaCGCGGTGCCCAGTGGGTTCTCCTCGGGGGATGTGCTCATCCCTTTAGCTGATGAAAGGCGGAAAGACAGACACGAAGCAGCTCCCAGTGGGTTTTCTAAGTGGCCAGAAGGTGAATCGGATGAGGAAGATGACTATGAGAAGGAAAGAAGGAAGAGAActatgggaggagcagcaattgcaccccccacctccctcgtTGAAAAAGACAGAGAACTTATAGCCAATACGTTTCCATATGAAGAAGAAGCCAGGAGTCGTGTTCCTTCTTCCAAAGCTGCTATTCCCCCTCCGATGTACGATGAGCCGGAGAGACCCCGCTCTCCCCCTGGGCCCACAAACTCGTTTCTGGCCAATATGGGCGGCACAGTGGCTCACAAAATCATGCAGAAGTATGGCTTTCGAGAGGGTCAGGGGCTGGGCAAGCACGAGCAGGGGCTGACAGATGCGTCAAAAAAGACAGATGGTAACCCATTGACAGAGATCTTGAAGTGTCCCACAAAAGTTGTATTGCTTAGGAACATGGTTGGAGGTGGGGAGGTTGATGAAGACCTGGAGGCCGAGACCAAAGAGGAATGCGAGAAATATGGCAAAGTGGTGAAGTGTGTCATTTTTGAGATTTCTGGTGTAAGTGACGACGAAGCAGTACGAATATTCCTGGAGTTTGAGAGGGTTGAGTCTGCGATAAAGGCTGTCGTGGACTTGAATGGGCGATACTTCGGTGGGCGTGTGGTCAAGGCCTGCTTCTATAATTTGGATAAATTCCGAGTTTTGGACCTGGGTGAACAGGATTGCTAATCCACCATAAACGACTGTAAGGGCTATGGACAAATGTAATTGACTTTGATGGACGCAAACCcctaaacaacaaaaagaactCTGGCTTTCATCATGAAAATTATCCTTCCAAAAGACCAATTTCATCACTGTATAGGGGTGCAGAAAACATGTGCCCACTCTTCGTCTGACTCTCCTGAGGTGTGCTGTcatctgttgttgttgcagtGTTGTGCTGGACTTTACCCACGGGGGGGTCCATGTGTTTCTCTTGTAACTGTACAAAATCAAGCCAAGGGATGAAGTCTGTGTATGTATAGCCAATGATGCTGCTTGGCTGCCAGTACCAAACTGGCATAGATGAAGGTCCCTCCAGAAATGTCACactgttgctgttttattttgtattaaatcttATTTGATTATTCTCATTTCCAGCAGTCTCGAATCATCTATTGACTTTTAAAGGTTCGTGTCATTTGCACATTAAACAGTGATGGCATACATGTGGTAGTTCTGGACTCAATACACCTTTGAGAGTGTGCAAGTGTGCGAGCCATCTTTTCCACGTGAATTATTTGGTGATTCACAGCTATATATAAAGCTCCCCAGCAATCCTTAGTTATGCTTCTATATACATGCTGCTTATAACATGATTGTGCAAGACCTTTACACCAGCAGCTCATGTCAGCCTTAAATGTGTATGAATTTGGAAAGCCAGGTGTGTTACCGCAGAATTAAGTCGGTCTCTGTGGGAAGCTTTGGTTTAGAATCAAAACACGATGCCTGTGGGGAGAGGATATGAAACGAATACATTCAGAGTACAGATTGTGAAAGACTTCCATACTATGATGCAGTGCTTGTGGGTTGTCACAAACAGGTTGCTCTGTCACAGGTAGTATCAGTAACTTTGCAGCATTACCTTCCCAACCTCTTGTACACTTTTTGGACAACACATATTACATCATATCAATGTCAGGACTTAAAAGGCAATTCAATTAATGGACTCATGGTACTCCCCAGGTCATTGTAGGTAGCATGTGtactgcattttcctttttgaataAAGGTTAAACTGAATGATTGAATGCTGTTAATTATCCTCTTGATAATTAAGCCCCCTCCCTTAAGGGTCACAGTATGTAACAAATCTGCTCTTGTGAAATTCGTGGAGTATAACTTCACACTgggtaatgttttattatactcGCCATCTGTTTCTTGGAACCGCTGTCCCTAATTTGAGGTATTTGATCGTGACCTTTAATGCTTCACATGAAATGGATATTAACCAACTCTGCTTCTGTTTTGTAAATCGCATTATAAAACCTTTCAATCAGTAATAAATCAATGTGTGTGAGGTAGAATCACTGTACTAAGTTTATTTTGTCTAGTGCAAAATCTGTGGGAGTGGAAAATGATTGTCTGAACTTGATTGCagtctaaattaaaatgaaaggacagtcttaatttca

Function

NR:

description
PREDICTED: splicing factor 45-like

GO:

id name namespace
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
K12840 RBM17, SPF45; splicing factor 45

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012896 True 2629 mRNA 0.43 13 12593885 12609201

Neighbor

gene id symbol gene type direction distance location
AMCG00012895 NA coding upstream 40815 12517928 ~ 12553070 (+)
AMCG00012893 NA coding upstream 78987 12508984 ~ 12514898 (+)
AMCG00012892 LOC103383002,LOC106525804 coding upstream 201780 12383058 ~ 12392105 (+)
AMCG00012885 NA coding upstream 351671 12235367 ~ 12242214 (+)
AMCG00012886 plxna4,LOC106921988 coding upstream 540772 12021466 ~ 12053113 (+)
AMCG00012897 NA coding downstream 9566 12618767 ~ 12627577 (+)
AMCG00012900 NA coding downstream 231040 12840241 ~ 12867057 (+)
AMCG00012904 NA coding downstream 275288 12884489 ~ 12901327 (+)
AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding downstream 297184 12906385 ~ 12916433 (+)
AMCG00012903 taf3 coding downstream 351147 12960348 ~ 12976980 (+)
G40643 NA non-coding upstream 72066 12521463 ~ 12521819 (+)
G40604 NA non-coding upstream 242157 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 399199 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 849090 11744596 ~ 11744795 (+)
G40497 exoc4,LOC107744930,LOC107725510,LOC107585070 non-coding upstream 1125667 11466221 ~ 11468218 (+)
G40710 NA non-coding downstream 131973 12741174 ~ 12742694 (+)
G40776 LOC107575789 non-coding downstream 505692 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 506111 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 651443 13260644 ~ 13261179 (+)
G40824 NA non-coding downstream 1274060 13883261 ~ 13885189 (+)
G40629 NA other upstream 57956 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 93483 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 2051925 10540728 ~ 10541960 (+)
G40224 NA other upstream 2149438 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3463674 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1819112 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1907582 14516783 ~ 14529806 (+)
G41059 NA other downstream 2023156 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 2472218 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2688761 15297962 ~ 15317344 (+)

Expression


Co-expression Network