AMCG00012903 (taf3)


Basic Information

Item Value
gene id AMCG00012903
gene name taf3
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 12960348 ~ 12976980 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012903
tcccctAATGTTTTCTCTATTGTATtacagaggaggaagaggagcaaGTACTCACAGATGGGGGCACCTCGGCTGAAGCCATGCAGGTTCCTCTGGAGGAAGAGGGTGAAATGGAGGAGGATGAGGCTGTAAATGATGAAAACTTTTTAGGCAAAAGACCCTTGGACAGCCCTGATTCCATGGACATGCCGGTCATGAAGAGGCCGAGGCATCAAGGCCTCAAATCAGAGAGCCCAGAAGGGGGGCTTGAGCTAAGGGAACCCCTTAGTTCCATAAACCCACAAAAGGTGCCCCCCATACCTTGTTCAGTCAATGCGCATGACAGCTCGGGCTCTTTGCCAATGTCGCCTGAGCTGCCAGTTTTACCTCCATCTTCTAAAATGCAGCTGCCTACCCCTAAAATCTTGGACACTAAACCAGCTACACCCAGCAGGAAACCCAAAATAACCTCACCAGGACAGAAAACCAAGTCCCCCAAGGGAGCAAACTTAGCTCCGGTCTCTGGAAGTCCAATCCGCTCACCCAAAGCCACACCTAAGGAAAAGAAATCTCCAGGGCGAACCAAAAGCCCAAAGAGTCCCAAGAGTCCCAAGATTCAACCAAATGTTTCTCATCCCACGGTCAAGGTAGAAACCCCAGTGAGAACACCTCTAGCAGCTCTGAGCGAAAAGATGGGAAAGGAAAATATCCACTTGAAGCAAGCACCAGGAATGTCCGACTCTGAGAAGCAATTTCCGGATCTGCAGTTAAAGAAATTGCCTCCGCCTGACAATACAATCGATGACTCCATTGACGCTGTTATCGCCCGGGCTTGTGCCGAGCGAGAGCCGGATccatttgctttttcttcagAATCGGAGAGTGAGATCTTTCCAAGTCCGAGGAGACTGACCATTTCAGAGCCGACAACCCCAAAACTGACCATCAGTACAAATAACTTCAGCAAGGATACGTCAACCCCTGTTCCTCTTCCTGCTGGAACATCGAGTTCGGATAACTCGTGGACAATGGACGATTCGATTAATGAGGTTATCCGCAAGGTGAACCTGtctgctcctcctcctgctgcgcCCCCCAATCCTCTCTACCTGTCGTCCCCGTCTGCTTCTCCGCCGACCCCAGAACCACTGCTCAAGGTTTACGAGGAAAAGAATAAGTTGGCTGCTTCGGTGGACGTGAAGAAAAAGCTGAAGAAAGAACTGAAGacaaaaatgaagaagaaggaaaaggaCAAGCAGAAAGAGAAGGACAAGGAGCGCGACAAGGAgaagagcaaagaaaaaaacagggagAAGAACAAGGAGAAGGACAAGGAAGCCATCAAGGAGGCCAAGCTACAGTGGAAGGACTTTGCCAAGGAGGAAGAGCTGTTCAAGCCAAGGGAATTTGAAGAGCTTGAACCCAAGGTGAAATCGAAAGACAGCAgctcaaagaaagaaaaagaaaagcacaaggataaaaagaaagataagGAGAAGAGTAAAaaagataaagagaaaaaagacaaggGCAAGGAAAAGAGTAAAGACGAAAAGCAGAAGATTCCTTGTACACCTCTCATCCTGCCCCCCAAGGAGACCCCATTGTCATTGTTCAGCACCCCCACTGGGGTCAGGATCCCTTCCATGTTGCCTTCCCTGCCTCCCATCCTCCCGGACAAGCTCTTCGAAGAGAAGGAGAAGCCtaaagagaaggagaagaagaaggagaaaaaggaaaagaagaagaagaaggacaaAGACAAGGAGAAGGacaaggagaaagagaaggagaaggtaAAAgacaaggagaaggaggaaaagaagaaagagaaagaaaaggagaaggagagaaaagaaaaggagaaggcagaaaaggagaaggaaaagCACAAGCATGAAAAAGTGAAGTTGGAACCACCTGTTGCAGCTCCCTCTCCAGTTATTCCCAGACTTACTCTAAGGGTGGGTGCCGGGCAGGACAAGATTGTCATCAGCAAAGTCGTCTCAACTCCAGAGGCTAAGGCTCCAGCCCCCAAGACCCCTGTGCAAAAAACCACTCCTGTCAGCCACCCCAGGacaccccccccagcccctgTCCTGGCTCCAGCTCCTATTCATACAGCACCCCCACCTGTACCAACGCCTCAGCCGCCCCCTCCTCCACTGCCGGCAGCTGCCTCCCCGGCCCCGGTGCCACCCCCGTCCCCAGCAGTGCCTGCAGCCGGCTCCTCCAAAACACCTGTCCGCAGCGTGGTGACAGAAACCGTCAGTACCTACGTGATTCGAGACGAGTGGGGAAATCAAATCTGGATCTGTCCTGGCTGTAATAAACCCGATGATGGCAGTCCTATGATTGGCTGTGATGACTGCGATGACTGGCCTTGCGTTGGGATCACAGCAGCCCCACCAGAAGAAGTTCAATGGTATTGTACTAAATGTGCCAACAAGAAGAAggacaaaaaacacaagaagagGAAGCATAAAGTGCATTGAAACAAACAATGTGTTTGTACATCTCTGAGCCACTCAAGACCCACCCTACCTATTGTTTTCCCTGACtgcaaaaataatgttgatGATTGGTTTGTTTGGAGGAGGGGGGATTTCTAACTTCGGATGCTGCAGAACATCCATGCTTTAGTTCCGCTTTGTTTTGTCCTGGAATAGTCCCTACCATGTCACAAGATCATTTgaaaatacatctatttttcTAAAGCAGTACAGTATTGATAAAACGGTGCTCAAACCTGCGTCAGGTATGTTGTCTTATGCCACTCATAGAATTATTGCATGACCAGCTGACTATATAACtccttacattttcaataatttaacaTGACCGTTCGCTTTCATATGCTGTGAGAATGCAATCGCGATGGTTATTTTAGGGTGGCATTGTGAGACAACCCTCACCTCCACTGTATGTGAAAGCAATGTGGAGAATACTACCTCCACAGGAAAGTGGTttgatttatgtaaaaaaaattataataaaacaaattgctcCAGTTCATTACTCCAGTGACGCAAATAGATCTCATCAAGGAGCCATTGTTCCCACAGAGCCCACCTCacagttgtttttgttagaTTATATTATTAAGACCCACAAATCATCAACCTTGGAAGAAACCTACTAAAACTTTAAAGGATAGCATACGTTTTcttaatcaatatttttctgCAACATGCCATGAGAGAAATGCaatctgtatatgtgtatgtatattaattcatgtgtgtatatatatgtacatataaacTCCCAAACAGTGTGTCCAGTTCCTTTTGATTTTCAGTTACTTCCCCAGATATCATTTTTAACTTCAAGgattttgtgtaattattgtatattttttaaaatgaaagtttgtatctctttatttttctctatttcAATTGTCCCTATTGTAGTTGTgcttgtaatatattttatttgcttgaCTTTTCCTATTAAAGATGAAATGCTACTACTCCCAGTACAGTAACTGCTTGTAATTCTCATTATCATTGAAACTTCAGAAAAACTtcataaaaaaatctgtactgcattttccctttttaaatgttctttctttgagtttattatgattgtaagtaaaattttatgttttcttcagtgaatgcaattacattttatatgatttGTGCAGGGTCAATATGTATAAGACTATTTAGTTACAGCCCGTGCTAatcttgtaaaatattttttgctgtttaattttattttatttccagtttgGTTGATggaataaaaactgtaaaac

Function

symbol description
taf3 Enables transcription cis-regulatory region binding activity. Acts upstream of or within hemopoiesis and regulation of muscle organ development. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF3 (TATA-box binding protein associated factor 3).

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012903 True 3748 mRNA 0.44 5 12960348 12976980

Neighbor

gene id symbol gene type direction distance location
AMCG00012905 atp5c1,LOC107748457,LOC107675979,LOC107555824 coding upstream 43915 12906385 ~ 12916433 (+)
AMCG00012904 NA coding upstream 59021 12884489 ~ 12901327 (+)
AMCG00012900 NA coding upstream 93291 12840241 ~ 12867057 (+)
AMCG00012897 NA coding upstream 332771 12618767 ~ 12627577 (+)
AMCG00012896 LOC107580939 coding upstream 351147 12593885 ~ 12609201 (+)
AMCG00012908 gata3 coding downstream 17610 12994590 ~ 13014587 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding downstream 737342 13714322 ~ 13743896 (+)
AMCG00012911 NA coding downstream 774169 13751149 ~ 13760598 (+)
AMCG00012909 LOC106927059 coding downstream 796810 13773790 ~ 13785856 (+)
AMCG00012912 NA coding downstream 886827 13863807 ~ 13882206 (+)
G40710 NA non-coding upstream 217654 12741174 ~ 12742694 (+)
G40643 NA non-coding upstream 438529 12521463 ~ 12521819 (+)
G40604 NA non-coding upstream 608620 12350850 ~ 12351728 (+)
G40571 NA non-coding upstream 765662 12194485 ~ 12194686 (+)
G40555 NA non-coding upstream 1215553 11744596 ~ 11744795 (+)
G40776 LOC107575789 non-coding downstream 137913 13114893 ~ 13115253 (+)
G40777 NA non-coding downstream 138332 13115312 ~ 13115532 (+)
G40788 LOC107575789 non-coding downstream 283664 13260644 ~ 13261179 (+)
G40824 NA non-coding downstream 906281 13883261 ~ 13885189 (+)
G40846 NA non-coding downstream 1009970 13986950 ~ 13988088 (+)
G40629 NA other upstream 424419 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 459946 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 2418388 10540728 ~ 10541960 (+)
G40224 NA other upstream 2515901 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 3830137 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 1451333 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 1539803 14516783 ~ 14529806 (+)
G41059 NA other downstream 1655377 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 2104439 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 2320982 15297962 ~ 15317344 (+)

Expression


Co-expression Network