AMCG00012912


Basic Information

Item Value
gene id AMCG00012912
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13863807 ~ 13882206 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012912
AGCTCATGAGAAGAATTTATAAGGGAATCCCTCTTCAGCTGCGTGGGGAGGTCTGGTGCTTGCTGCTTGatataccaaaaataaaagcgGAGAAAAGGGACTACTACGAGAAACTAAAGCAGAGAGCCAGGGGGATTTCTCCAGACATCAGGCAGATTGATCTGGATGTGAACCGCACTTACCGGGACCACATCATGTTCAGGGATAGATATGATGTGAAGCAGCAAGCCCTATTCCATGTTCTCACGGCTTATTCCATGTATAACACAGAGGTTGGATACTGTCAGGGAATGAGCCAGATCACCGCCTTGCTTCTCATCTACATGAATGAAGAAGATGCCTTCTGGGCCCTTGTGAAACTTCTGTCTGGACAGAAACATGCCATGCACGGGTTCTTTATTCCTGGATTCCCAAAGTTGATGAGGTTTCAAGAGCACCATGACCGGATTCTGAAGAAGATGATGCCTAAATTAAAGCAACATTTGgaTAACCAAGAAGTTTTCACCAGTCTGTACACCATGAAGTGGTTCTTTCAGTGTTTCCTTGATAGAACTCCATTTACTTTAACCTTAAGGATATGGGATATTTACATCCTTGAAGGAGAACGGGTTCTTACAGCCATGTCTTACACTGTCCTTAAACTCCACAAAAAGCACCTGCTGAAGCTGTCCATGGAGGAACTGGTGGAATTCCTCCAGGTGACTCTGTCCAAGGACTTCTTCTTCGATGATGACTTCGTAATCGATCAGCTGCAGAACTCCATGTCAGAGCTGCGGCGGTCCAAGCTGGAGCTGCCTCCCCCAGGTAAGGAGGATGAAATCCCAAAGAAGACACTGGGCCAGTTGCCACCCGAGCCTCAGCAAGCCATTTCCAATCATGTTGGCAACGGACAGAGCAGCAGCGCTAAGCTGGACGTGCACGCTCCCAAGAGCCATGCTCCCAGTGCCTCCCCCGAGAGAGCTGGGCCGACTCACAGCCGAGGGAGAAAAGACTCTTTTGAAAAATCGCTGAAGCGGAATAAGGCAGAGAAGTGGGACGGACATGCACGGACGCCTTCAGAGGCGGAGCTGCGGAAACAGATGGCTGTGGTTCCTCCTCAAGCTGTGGCTCAGGACGGCACTAGGCAGTTCAACAACGCAACTGCCAACCACAACTCTAATGCTGCCTCAAGTGCAAGGAAGGACTTTGCCCCAAGGTGGAATAAACCCTCTGACACAAAACTGGTAGAAGCAGCTACAAAGTCTGCTCTGGACAGCAGGGGCAGGGCTCTAAACTACAGTGTTGCCAGCTCCCCGTCCAGTCCCGACGAGGCCCAGGTGCTTTTTGTCAGGCCAAAGGCTAGAGGATTGATGGTGGACGAAACCAAAAGAGGGTCCAATGCTTCGCAGTATGACAACGTCCCCGGCCCCGATCATGACTTTGAGAATCGCGCCGAGGACATGCTGGAGAGGTCCATCCCCCGAAGTCTGCGCGGCGAGTCCGCGTTCGCCAGCCAGCCGCACAAGTCGGCCAGTCCGACCAGAATGCCAGGTGGCGTTGTCGCAAGCGGACCACAGAGATCTCAGAAGCAGTTCGAAGGTCCAGACCAAAGATCCCCAGGAAAGCCCCCTCCCTCCTACTCCAACCCCCCGATGTACCACACCAACTCGGCACCGTATTCTCCAGCAAAGCCCGGACCGTCTCCTCCGTATCGCCCGCAGTACAGCACCATTGTGGACGTGAAGCCCGACGACAGGCATCACGGCATCCCCCCACACACTCCCCTCGATCTGCCCGCTGAGAAGGCCTACCCCACCTACCCCAGGCACGCCTCCAGCTCCTCCCAGTCTAACCACATCATGGTAATGCCCGCCGAGAGAAACGCACAGTACGACTCTGTGAACTCCAGCAACTATCTGAGACAGCCGACCAAGCTGATAGGTACACAAGCATACCCGCCTGTGGACTACGTGCCAGAGGGCAGGAGACGGCCAGACCACCTGCCTCCGTATAGGCAGGAAGGCCACCGGCGGGAGTGGAACCATGAGGTAGACCCTTCACGCATGGGGAACGTGCCAAGGTCCCCAAGCTTTCAAAGGGCACAGATGTCCCCAGTTCAGGAGTTCAGCTACCCTCCAGTACCCATGGATGGGTCACTCCATTACAGGACTATGTATCAAGAACAACAGTCTCCTGCCCGATTGCAGCTTCCGAACTCTCCGAGTGGACAACACTACAGACGTCCTGCTGAGAATTTTACCATACAGGAGTCCATGATGCTGTGAAAAGTCACCTCCCCTTTGTATCGGTGTAAAGCAAAGGCAAACAGTAATCATAGCATTTCTTAGGTTTGTTTACACGTGATGTGCTGACCTCATGTTGGAATCACGTGGCGTAGCTCAGGCTTCTAATGTTTAGTATGCCGACTGGAACCGttgcttaatttgtatttaaattcacGGCAGAAAATTTGATTCTCAATTCTCATtggattaaatgtattttgttggtCGAATGAGCCATTTAAAATGctcaattatttgtattcaacaggattattgtttttcatgattCTAAAACtcagtgatttttctttttttcctcaattGAGTTACAAACGGTTGTCTTCTTTTAAAggtcaattaatgtattatatacttTTTCCATACATTTAAACTCTCTAGAAGGATGAAAAATAACTCTTCAGAGCAATGTATGTAACTTTGCAGTAGCAGTCTTACGGTTTAGTTTCTTCAGTTATAAGTGCTAACGCAGTCTCTTGACAAATAGTACAGTGAAAAAGTGTTGGAAGGATCAGTGCTAGTGGTGCTTTTTTCATTGCAGAGATGAATGTTGTGAAACTGAACCCTAGTGCACTGCATTTTTAACAGTATGACACttcttaaaacaataattgatGTTATTAAAGTTTATACTGTTACTttatcagttttttattttttatttttttattttgcagaatgctattgtgttaaagaaaagaaaattataatttcagcAAGTACTGAAGTACAGTCTGCTGTAGTTTGCTATAGTTTACTGCTTTTACAAATGGTTGTTGTTTGCCTTTCCTTTTAATGTAATGTCCTCAGAAGATATTGAAATATGtgaaaagattgttttaaagattgtttcttttagtttttttattttatttttttccattgaaGCACTACGTATGGAAACACTACATTGCACTGCAGGTGcaagtgtgtatttatatatgtgtgtgtgtgtatatgtgtatgtatgtatatatgtgtgtatatatatatatatatatatatatatatatataattagggctgggcgatatgacttaaaaatgatatctcgatatttttggAAGTTTGGCCGATATATACCTCGATAtgccttgtttttatccaatcaagctacaaaataagaccaaagacatttaaataagtctttatttaatcattaaatatgcaaaactaacaaatactacatgcaggctgtcatatATAACC

Function

GO: NA

KEGG:

id description
K20133 USP6NL; USP6 N-terminal-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012912 True 3491 mRNA 0.46 9 13863807 13882206

Neighbor

gene id symbol gene type direction distance location
AMCG00012909 LOC106927059 coding upstream 77951 13773790 ~ 13785856 (+)
AMCG00012911 NA coding upstream 103209 13751149 ~ 13760598 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding upstream 119911 13714322 ~ 13743896 (+)
AMCG00012908 gata3 coding upstream 849220 12994590 ~ 13014587 (+)
AMCG00012903 taf3 coding upstream 886827 12960348 ~ 12976980 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding downstream 7502 13889708 ~ 13891565 (+)
AMCG00012913 NA coding downstream 12462 13894668 ~ 13904145 (+)
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding downstream 58220 13940426 ~ 13952847 (+)
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding downstream 71880 13954086 ~ 13960215 (+)
AMCG00012918 cdc123,LOC106576189 coding downstream 96342 13978548 ~ 13989776 (+)
G40788 LOC107575789 non-coding upstream 602628 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 748275 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 748554 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 1121113 12741174 ~ 12742694 (+)
G40643 NA non-coding upstream 1341988 12521463 ~ 12521819 (+)
G40824 NA non-coding downstream 1055 13883261 ~ 13885189 (+)
G40846 NA non-coding downstream 104744 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 303034 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 458740 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 513370 14395576 ~ 14395899 (+)
G40629 NA other upstream 1327878 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1363405 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3321847 10540728 ~ 10541960 (+)
G40224 NA other upstream 3419360 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4733596 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 546107 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 634577 14516783 ~ 14529806 (+)
G41059 NA other downstream 750151 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1199213 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1415756 15297962 ~ 15317344 (+)

Expression


Co-expression Network