AMCG00012913


Basic Information

Item Value
gene id AMCG00012913
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13894668 ~ 13904145 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012913
GCCTGGAAGGAGGGGCAATGGAGCGCCACGGCGAGTCAAGTAGGATGGCAGTTTAATGGACCcagcttgtttgtttaatataaatctcTGTAGTGAAATGGTTGATTTATGTATCTCTGTAGGGGATTCACAGTCAGCCCTCTTTTGAAAGTATTGAATCAGTTCTTGAGGAGCGAATTACCTCCACGTCTCTACCTGTAAGtgtGGTGTCCTAGCGAAGATGTGACATGAGACCATGGTGTGCGAGTGAAAGCTTTGACCGGCACCAGAGGAAGAAGGCCTGGGGAAGTATCTATCCTTCGAGAAATGCCAAGAGGCAACAGTGATCGCAATTCCACCATGGATTTGAACATCTCCGCGAAGCCCAGGCCCCAGTATGGACTTAATGGGAGCCACGAAGCCAGCAGCAGGACTCCCCTGTCGTCTTCCTCTCCGaatGAGGATGCCCTCCAGTTCCTGAGCTGGGAGGAGAAGGAATGCATCATATTCTTCGAGGAGACCATTGACTCCCTGGATGATGATCGAGCAGACTCCACTTTCTCTTCAGGGAGCAGTACTCCAGTTGTTGACCGGGCTACGCCAACCTTCATGGAGCAAAGAAATCCCAGCCCCAAGGGGGAAGACATCATTGACCTGGTTCATGGAAGCCCAACAGAATTCAGCGGGCTTGTTTACAAGCCACATGGCACTGGTGGTGGCACTGCGCTCGCTGCTCATGatgtCACAAGTGTCTCCATGCACCCCGAGTCACATTTTGAGATGAGACCAAGGCGGCAGGTAACGGAAGGCTACCCCTCAGAGTTCACATTCCCTGCTCCACCTCCCCCCATGTCCAATCTAGAAGGAGACTCCTTTGCGTCCCCTTTCTACCACCCTGCCGGCTCCATTCCCACGCCGGTCATCATTGCCCAGAAGATAGCGGAGAACCAGGCAGGGGCCGCACCGTTCTCCTCCACCTCCTTATTGACAGAGAGAAGCAGCAGCCTGGAAAGTGACAGGAGCCCCCCACCCTCTCCTGACTACATGGGCAGGACAGGCCCCACCACAGCAGCAAAGCCTAACAAATATCCAGGCAACATCAATGTCGTCATGGGAGGCAAAGACTATAACCAGACCATCGCGAAAGCAGCCGTCAAGGTTCAGGAAAGGAAAGCGCAAGTGTGGGCCAACCTAACTGGGGCGCCTCTCAATTCCATTAACCTGGAAGAGAAGCCAACCAACCAGAGGAACCAACCAACCAGAAGCACGTCTTTCAGAGACCCCATGCCCAGCAAGTCGAGGCAAGAAGCATTGTCCATTCTGGGCCTGAACAAGAATGTCCCAAAAAGCCCCAGTGGTAGTAAGCCCAGAGTTGTGTCCTCTCCTCCGGATTCACCGAGCAAAGCTGGCATTGCGTCTACTGACCTCCGTTACCACGGCAGTAATCCCCGACCGGGAGCTTTCCCCTTCGGCTCCAGTTCGAAGCCAGCTGCATACAGGCCGGATACCCGTCCCTCCGAGAACAGATCTTCCTGCCACAATGGTGCTCAGAGTGCTCATGTCAGCAGCTCGGCGCCGTTGTCACCAGACCTGGTGAGACAGCGCCCTGCGTCAGCATTCAGACCTCAGGGAATTACAGTGCAGTTCTCCGGGCGAGGGGCCACCGATGAATCCAGAAGACAAGCACTGAGGAAGCTTGGTCTTTTGAAGGActcttgatttattattttttttctatcttttctGGGTAACATTATCTAAGCATGAATATTAATCTACAGGCCGGCCTGGCCAGTGGTGTTGCTATAGATGGaatcttattttttgtgtgataAATATAGTGGTTTGGGGgatgaaaaacaattatttaattatatctgattaatttaatctgaaaagaaacaacaaaaacaatctggCATCTGTGCAAATGGCTTTTCCTGCAATTAAATGTATCCAGGATACTCAATGAAAAGCAACACACATGGGGAAAAAGGACACGTGTATATGACTGATCTGATGACTAATAATTAAtggttttgttctttaattattagttcCTGATATTTATTATAGTAGCTACAGTTTATAAGTCTGATCTGCATTGTTTGGAACTATCAGCCGAGTCTTTGGAAGTGTTGAGACCTTGCATGAGCTGGGCCCATGGGCCTTCTCTCATTGGCAGCCTTTCTTATATACTTGTTTAGTCTTGATATGAAAAAAACTAACCTGCCCAGTTCCCCCAGTGGCATGTTCATTTAAAAGCCCCTGCTCAGAGTCCAGGATGGGTTGTGCTTGGGCCTCACTGCTTAGACTGAGGGCTGTGCTACTCACCATCTAGGGTCAGAACTCCCATCAATTCCCATTAGTGGTCGCAGCCCGCGAGCCTGTCTCAGCTCTGCCCCGACACAAGAACGCTACTGTTTCACCTCTCGGGGAGAAAAAACGAGCAGATGCTGAACGGCAGGTCTTGCGGGACACGTTGGCTGTCTTCATATCTGGGGCGGAAGCAGTAGGTTGCTTCGAATGGTAATTGGCTATTCCAAATTGTAGGGCATTAAAGTGAGGGAGGGGATTgcaattttgtgtgtgtgtgtataatatatatacacacacacacacacttaagtGACAAACTGTGAACATGGTAACCTTAGCCCCTTGAACTAGGAAAGCTAATACTGTGACAAGTATCATGTTTTTGTACTCTGAAGCATTGGGGAAGACCGTTGAGGCTGTAACCAGGAGGAATCTGCATAATATGAATCAATTTTGTACTTTTATAAACTATTAatggtaaaaatgtaaaatgatgcCATCCACAGTTATGACGAGCCAAGCTGAGCTACTTAAGATCCTACAACTCAGTGGTGTTAAACAGCCAAAGCAAtttccttaattgtttttgaaaaccgCTTTCCCAAATGTTAGACCTCCTGTTTAAAAGTGATGTATGTAGCTGGTTTCCTGCAGGTCTTGCTGGTCTTCTGGCTGCAGTAGAAATGGGAAATCCCCAACACATCTACAGCAGCATTGAGTGCCTGTCCGTATCTGTGCTATCAGGGCGAGTGAGTGGGTGCGTGTGGGTGTGTATGCTTGGGCAGGAGCGCGAGTGATTATGAGGGCACACTAATGAGTgtggcattttttttgttttctaatattgACTCCGGTAGTGTAGTCTTATGCTACAATTATTCATGAAGTATTCAGTAACTGTGTGTacgagtgtgtgagtgagttcAATCATAAATAGCAGGATTACCCCTATAGACCAGGAGGATTTCAGGAAACCCTAGTGTAACACACTGCTGCTGGCcctgtattttctttgtgaaGCCATTGTATATTGAATGTTAATCACACCTTGTTTAGATTCTAGTTTAacaatctatatttatattgcatataAATTCAAAGTTTGTGTCTGAAGACTGGTTTATATCTACCTGAGAATGACAGTTTTATTCACTGTATTGTAGAAGACATTTATACTATTAAGGTCACTTTATAAGCAACAgagaataaatgtttgtttaattcttaATTGCTTTATGATGTTTTGCATTGACATGCAAGGTGCTGTCAGATGTAGAGGAGTGGCAGTATAACGATCAATCAAAAATGCCTAGAAATAATTCTCACCTTGGTCAAATATACTAAGCAAATACAACACTTCTGTATTCAATATGCTGTTTCATGGACAGAAAGCAAACTGACACAAGTTCTCCCCAAAGGCACAGAATGCAACCTGTCCAGATCTCTCCTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012913 True 3751 mRNA 0.46 4 13894668 13904145

Neighbor

gene id symbol gene type direction distance location
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding upstream 3103 13889708 ~ 13891565 (+)
AMCG00012912 NA coding upstream 12462 13863807 ~ 13882206 (+)
AMCG00012909 LOC106927059 coding upstream 108812 13773790 ~ 13785856 (+)
AMCG00012911 NA coding upstream 134070 13751149 ~ 13760598 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding upstream 150772 13714322 ~ 13743896 (+)
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding downstream 36281 13940426 ~ 13952847 (+)
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding downstream 49941 13954086 ~ 13960215 (+)
AMCG00012918 cdc123,LOC106576189 coding downstream 74403 13978548 ~ 13989776 (+)
AMCG00012920 NA coding downstream 138114 14042259 ~ 14061913 (+)
AMCG00012921 camk1d coding downstream 174179 14078324 ~ 14102726 (+)
G40824 NA non-coding upstream 9479 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 633489 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 779136 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 779415 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 1151974 12741174 ~ 12742694 (+)
G40846 NA non-coding downstream 82805 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 281095 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 436801 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 491431 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 493452 14397597 ~ 14397855 (+)
G40629 NA other upstream 1358739 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1394266 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3352708 10540728 ~ 10541960 (+)
G40224 NA other upstream 3450221 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4764457 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 524168 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 612638 14516783 ~ 14529806 (+)
G41059 NA other downstream 728212 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1177274 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1393817 15297962 ~ 15317344 (+)

Expression


Co-expression Network