AMCG00012914 (dhtkd1,LOC107569696,LOC104963732,LOC107740898)


Basic Information

Item Value
gene id AMCG00012914
gene name dhtkd1,LOC107569696,LOC104963732,LOC107740898
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13940426 ~ 13952847 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012914
GCAGTGGGAGGTGTTGTCAAAGCTCCCGCTTCAGTGGCAAGAGGGCTTACAGCATGGCTGCCTAATTCTGCTCCGACTGCTTCACACAAGTCCtagttgtattatttgtaaCGTCAGCAAAACCTAATCAAACATGTCCGCTTTTCTTTTATCGAAACCCTTGCATTTAGCAGCCAGGACGTGTCTGAATACAGCTCGTCCGCTCCTGAGCAATGTGTATCACACCGAGAGAGGTGTCTATGGGTACAAGCCGAAGAGGAGCGACACTGACCCCAAATTGATTAAGTCCGAGTATATCTCTGCACACAACCAAGATCATGGCCTGGCACGATTGGTGGAGGCCTACCGAACATATGGCCACAAGGCTGCGAAGATTAACCCTTTATTCACTGGTCAATCAGTGATGGACATGGTGCCTGAAGTCAGCCTGTTGACCGAAGTGCTTCACGGTCCTTTCAACACAAGtgctttaaagcaCTTTGGCAAAGAGGAAGCCTCACTGGAAGATGTGTTGGCCTATCTTGACCACACCTATTGTGGTCACATCTGTGTGGAGACCAACCAGCTCCAAAgcctggaggagagagagtggtTCTCCAACAGGTTTGAGGAACTGAAAAAGGAAACGTTCTCACCAGAAGAGAGGAGAAATCTAGCCAGAATCATGCTAGAATCGCAGGAATTTGACCACTTCTTAGGTACTAAGTTTGCAACAGTGAAGAGATACGGGGGAGAAGGGGCAGAGAGCATGATGGGATTCTTCCACGAGCTGTTCCGTCTCTGTGCAAACAGTGGGGTGACGGATGTAATTATGGGCATGCCCCACCGCGGGCGGCTCAATCTTCTGACTGGACTCCTGCAGTTCCCTCCGGAGCTCATGTTCCGTAAGATGCGAGGACTGAGTGAGTTTCCCGAGAACTCCCCGTCCATCGGAGACGTCCTGTCTCACCTGACCTCCTCGGTGGATCTGGACTTCGGCTATGGACACCCCCTCCACGTCACCATGCTGCCCAACCCCTCTCACCTGGAGGCAATCAACCCCGTGACTGTGGGCAAGACCAGGGGACGACAGCAGTCTAAGGAGGATGGGGACTACTCTCCAGACAGCAGCGCTCAGCCTGGGGATAAAGTCATCTGTCTGCAGGTCCATGGGGATGCGTCGTTCTCAGGCCAGGGGATTGTCGCGGAGACCTTCACAATTGCAAATCTCCCCCACTTCAGAGTAGGTGGAAGCATCCATCTGATTGTAAACAACCAAGTCGGTTATACCACTCCGGCTGAGAGAGGAAGATCTTCATTATACTGCAGCGATGTGGGTAAGATGATCGGATGCGCTGTGATCCATGTGAATGGGGACGATGCGGAGGAGGTCCTGCGGGCCACCAGGCTGGCGGTGGAGTACCAGCGGCTGTTCCGCAGAGACATCATCGTGGACCTCATCTGCTACCGACAGTGGGGGCACAACGAGCTGGACGAGCCTTTCTTCACCAACCCTGCCATGTCTAGGAAGAGTATCCCTGACACCTATTCAGACCTCCTGATATCGGAGGGACTGATGAGCGAGCAGGAGTGGTCAGAGATAAAGACCTCTTACTACTCCAAACTGAACGAGCATCTGGCCAACATGACACTgtacagccccccccccaccaacttGCAGGGCCACTGGCGAGACCTGACGGAGCCCCAGGCCAAGATCTCGACCTGGGACACCGGCCTCCCCACACAGCTGCTGCAGTTCGTGGGAGCCAAGTCCGTGAGCATCCCGGAGGAGATACAACTGCACAGCCACCTCAACAAGACGCATGTTCAGaagctggaggaaggaactAAACTAGACTGGTCCACAGCTGAAGCTTTGGCATTCGGCTCCCTTCTCTGTCAAGGGTTTAATATTCGCATCAGTGGACAAGATGTAGGGCGTGGCACTTTCAGTCAGCGGCATGCCATGGTTGTCTGTCAGGAATCAAACGACATGTACATCCCCCTGAATCACATTGTACCTGAGCAGAAAGGATTCttggaggTGTGTAACAGTGCTTTGTCTGAAGAAGCTGTCCTTGGGTTTGAGTATGGGATGAGTATCGAGAGCCCAAAGCTCTTACCCATATGGGAGGCCCAGTTTGGAGACTTCTTTAATGGAGCACAGATTATCTTTGACACATTCATCACTGGAGGCGAGGCGAAGTGGCTCCTGCAGAGCGGCCTGGTCGTTCTCCTGCCCCACGGCTACGACGGGGCCGGGCCCGAACACTCCTCCTGTCGCATCGAGAGGTTTCTGCAGCTGTGTGACAGTCGAGAGGAGGGTGTGGATGGGGACAATGTCAACATATCTGTGGTCAACCCCACCACCCCTGCGCAGTATTTCCACCTGCTGCGTCGTCAGATGGTCAGAAGCTTCCGGAAGCCCCTCATCGTGGCTTCACCTAAGATGCTGCTCCGTTTCTCGGGTGCTGTGTCAAGCTTGGCAGATTTGGCCCCAGGAACAACATTCAAGCCTGTTCTTGGTGACCCCTCTGTGAAACCCAGCAGTGTGAGCCGGGTGGTGCTTTGCTCTGGGAAGCACTACTATGCCCTGCTGAAACAGAGGGAGGTGGCCGGGGCCCAGCACAACACGGCCCTGATCCGCCTGGAGGAGCTCTGTCCTTTTCCCCTGGAAGCCCTGCAGCAGGAGCTCAGCAAATACAGCAACGCCAAAGattttatttggAGTCAGGAAGAGCCTCAGAACATGGGCCCCTGGACTTTTGTAGCTCCCCGGTTTGAAAAGCAGTTAGCCTGTAAGCTACGCCTGGTGAGCCGGCCTGCTCTCCCGGCCCCCGCGGTGGGCATCGGGACTCtgcaccagcagcagcaggaagcCATTCTCACAGCCACCTTTGCCTGAGGGACCAACTGGACTGGTCCTCCACTGAACTAGCTGTGCTTGCTCCTCCATACAATGTAACTGGAAGGGTCTCGGGGCTGATGGATGTCatgttttttactgttttttaatcaaatcactTCTAAAGGATGTGGATGAAACACTGAAAGGGGGAGAATGGTGGAAAAGAGACCCTCTTAAATCATTGTAAACTCTGCAGGAATTGGTCAATCTGGTCCCCAGGGGACATTCCACTATAGGTTAAAAGGAACAATTGAACTGGTCACAGATGGGTGTAGCTGAAACAAAGACTCTGGAATCGGATTGATTGatatttttcttcctgttcTACTTTAGTCTGATGTCTTTATTTCCCTTTCTGTGTTATGTGGAAGGGGGGAAACAGATGCAAGCATCACACCTAGAGGTTAAGACAGTAAAAGGTCCAAGTCTGTAACATTAGttgtacattaaattaaataattaattgtactATCCAACACTACAgttcaattaaatgcattacttgCTTCTGAAGATTTGGTGTTTATTATGCTGCTGTTTACTTTTTGGTAAGTTTAGCTCTTTGGAAAAAGGGAGTACATTTCTCTCTAAAGTCTACTTCTCAGAGGATTTTAATGGTACAGTGAATGTATACTCTGTACATAGCCGTAAATCTGTCACACTTCACTTCGATGGACAACCAGCAGTAAATATTGGGATCCTCCTAATAAAGAGGGGTTCTTTATACATCATATGGTACTACAGAGCTGTTTTCGCTGGCCTTCCTTTTAAATGAGTGATCCTCAGACTGAAttacttaagaacataagaaagtttacaaacgagaggaggccattcaatccatcatgctcgtttggtgtccattaataactaagtgatccaaggatcctatgcagtctatttttaaatgttcccaacttttcagcttcaaccacatcgctggggagtttgttcattTCCATACTGAAATTATTTGCAGTGTTGTAGAACACATTTCATATTAATCTGAAAAGTACCTTGTGGATGTTGGTTTGCTTACTGCTTGTGAACAAATTGTACtgatttaagttttaaaatatcataaacTGTTTTGAACCGAATTTGTCAATGTTTCAGTCACCAGTGTTCAATATTTTGGTGTATTTTAAGATGCAACataaaaacatgtgaaaagggtgtgttaaatgaataaattaatacaaataatataaggAAATGCAAGTCCTTAATGTTATAACCAAATAAACCTTGCACATTCAGATTTCAAGTTGAAGTTGTTTgagataaataacaaaaaatagtaCAGAAAATATTGTGTACTTATACGATGTAGGGGGGTGCCTATAAATGCTCTACAGTGAACAGTAATGTGGCCGTTTTCTCACAAGTTCAGCACAGAGATGTTTTGtcattgtttcagtttcaaCCTGTGGGGGAAAAAGATAGAAATCCTATTATCTGTTATTATCTATtatccacgtagactcctaggcctttctcatgcgttacatctagttctattcctcccatagtgtaattatagtgg

Function

symbol description
dhtkd1 Predicted to enable oxoglutarate dehydrogenase (succinyl-transferring) activity and thiamine pyrophosphate binding activity. Predicted to act upstream of or within glycolytic process and tricarboxylic acid cycle. Predicted to be located in mitochondrion. Is expressed in alar plate midbrain region; eye; immature eye; musculature system; and optic tectum. Human ortholog(s) of this gene implicated in 2-aminoadipic 2-oxoadipic aciduria and Charcot-Marie-Tooth disease axonal type 2Q. Orthologous to human DHTKD1 (dehydrogenase E1 and transketolase domain containing 1).

NR:

description
PREDICTED: probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial isoform X2

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0030976 thiamine pyrophosphate binding molecular_function
GO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity molecular_function

KEGG:

id description
K15791 DHKTD1; probable 2-oxoglutarate dehydrogenase E1 component DHKTD1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012914 True 4436 mRNA 0.48 17 13940426 13952847

Neighbor

gene id symbol gene type direction distance location
AMCG00012913 NA coding upstream 36281 13894668 ~ 13904145 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding upstream 48861 13889708 ~ 13891565 (+)
AMCG00012912 NA coding upstream 58220 13863807 ~ 13882206 (+)
AMCG00012909 LOC106927059 coding upstream 154570 13773790 ~ 13785856 (+)
AMCG00012911 NA coding upstream 179828 13751149 ~ 13760598 (+)
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding downstream 1239 13954086 ~ 13960215 (+)
AMCG00012918 cdc123,LOC106576189 coding downstream 25701 13978548 ~ 13989776 (+)
AMCG00012920 NA coding downstream 89412 14042259 ~ 14061913 (+)
AMCG00012921 camk1d coding downstream 125477 14078324 ~ 14102726 (+)
AMCG00012923 NA coding downstream 193640 14146487 ~ 14152861 (+)
G40824 NA non-coding upstream 55237 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 679247 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 824894 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 825173 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 1197732 12741174 ~ 12742694 (+)
G40846 NA non-coding downstream 34103 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 232393 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 388099 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 442729 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 444750 14397597 ~ 14397855 (+)
G40629 NA other upstream 1404497 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1440024 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3398466 10540728 ~ 10541960 (+)
G40224 NA other upstream 3495979 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4810215 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 475466 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 563936 14516783 ~ 14529806 (+)
G41059 NA other downstream 679510 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1128572 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1345115 15297962 ~ 15317344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000184_00289439_00299590 DHTKD1 coding CI01000184 null 289143 ~ 300445 (+)