AMCG00012915 (sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725)


Basic Information

Item Value
gene id AMCG00012915
gene name sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13954086 ~ 13960215 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012915
CTAGCCTCTAGCAGGGTGTAAGCTGACGTGTACTACAGGTCCCGGGCCATCTTGTCAGCGCGTCATGTGACGTGTCCATTCCTTTCGTCGTCCCCCTGCAGAGAGAAAAAGGACGGAGGAGAGCAGCTACCGAGACAAGGGGgtataatttcctttaaaaatcaaCCTTTATGTCATCTTGCCATCTATAACACGCTCTTGGACACCATGGGGATTAAATTTTTGGAGGTCATAAAGCCCTTCTGTGCTGTTCTACCTGAAATCCAGAAACCGGAGAGAAAGATTCCATTGTTTGGGATTATGTCATCAGACTCGGCCGATCCATTCTACTGGATGAGAGTCATCTTGGCATCCAACAGAGGGACCCTGATGGAACTTGGCATCTCTCCAATTGTGACATCTGGGCTGATCATGCAGCTCCTTGCTGGAGCTAAAATTATTGAAGTTGGAGACACACCCAAAGACAGAGCCCTGTTCAACGGagcacaaaaatTGTTTGGCATGATCATAACGATCGGTCAGGCCATTGTGTACGTGATGACTGGCATGTATGGAGATCCTGCAGAAATGGGAGCTGGTATCTGTCTTTTAATCATCATTCAGCTTTTTGTTGCTGGCTTGATAGTGCTGCTGTTGGACGAGTTGCTTCAGAAGGGGTATGGGCTCGGATCAGGAATCTCTCTCTTTATCGCAACAAACATCTGTGAAACCATCGTGTGGAAAGCCTTCAGTCCGACCACAATAAACACTGGGAGAGgAACGGAGTTTGAAGGTGCAGTGATTGCACTCTTTCATCTGCTGGCCACCAGATCTGACAAAGTGCGCGCGCTGCGAGAGGCCTTCTACCGCCAGAATCTGCCCAACCTCATGAACCTGATTTCCACAGTCTTCGTTTTTGGTGTAGTCATATACTTCCAgGGCTTCCGCGTGGACCTGCCAATCAAGTCTGCCCGCTACCGTGGACAGTACAGCAGCTACCCCATTAAGCTCTTCTACACTTCCAACATCCCCATCATCCTGCAGTCTGCCCTGGTCTCCAACCTTTACGTCATCTCGCAGATGCTGTCGGTCCGCTTCAGTGGGAACTTCCTGGTCAACCTGCTGGGACAGTGGGCGGATGTCAGCGGGGGAGGTCCTGCCCGCTCCTACCCTGTAGGTGGCCTCTGCTACTACCTGTCGCCTCCGGAGTCCATGGGTGCCATATTTGAAGACCCCATTCATGTTATGGTCTACATCGTATTCATGCTGGGGTCATGTGCTTTCTTCTCCAAGACGTGGATTGACGTTTCTGGCTCCTCTGCGAAGGatGTGGCAAAACAGCTCAAAGAACAACAGATGGTAATGAGGGGACACAGAGAAACATCCATGGTCCACGAACTCAATAGGTATATTCCCACTGCAGCTGCGTTTGGCGGCCTGTGTATCGGTGCCCTGTCAGTGTTGGCTGACTTCCTGGGAGCCATCGGATCAGGCACTGGGATTTTGCTTGCGGTTACGATCATATACCAGTACTTTGAAATTTTTGTCAAGGAGCAGGCGGAGGTCGGGGGAATGGGAGGCTTGTTCTTCTAAACACGCCCTCTGTGTGGAACTGTCTTATTGAAATGCTAAAGGAAAACTTCTTAcgttgtacatttttttttttttttttttttttctttttgtctagAAGATTTAGTGTGTCTTTGCTTCTCCATGTTGACCATGCAGAATACCCCACTTTTTaaattggggggagggggggattgaACTCTGCCTGTGCAGCAGTTTGTTCCAGCTGCCTTAACATGTTTACATGAACTTGTGAAGCGTTGCCTGTAATGCAGAGATCCagtataaacacacatgcaccctGCAACACTGAGGATACCTGATTTGAACACTACACAATTGCAGTGGAATGTAATTAAAGCTTTTGGACAAtatgattttcatatttaagtgctttgtttttgttttgttttttaagtatcaaATGCGTTACGCATCTTTTTACCAGTGGGAGAGACGTTCACAGTTCAGTCATGGCAAGCAGTGTTTTCTGATCGTCACGGAGAATGTGCACGAGCATCGAGTGTTGTGCATTCTGGGATTGCACCTGACTTCTTGTTGTTCTGCCACACTAATGTAACttggctaaataaataaactattttcagCAATGTCTTTGACTGAACCCAAATAAACCAGGATTAAACAATGGTTAAATAGTAGGAATAGGTCCAGGAATTTTAAGcagttcacttttttttttttctttcctcaatGAGTGGGAAGGCAGGATTGGGGATGGAGTTTATGAGAGCGTATCCTCTTCTTTCAAACGACTAATGCTGCAGTAaagttttaattacaattcaagattattttatttttggacttTTAAATGGGAACTTTTACAGTGGATAAATGCTAAATGTCTTTTTTGTTGTGTACTGGTGCAATTGAACTATGACATAATGGCACTGCCCAGGGGGAGCTAGGCATTCAACACTATCAAGGATTTGTGATGCTATCTGTCAGTTTTCACTAAGTTCGCTTCACAAGGTGAGCTCATTAAGTTAgtgccagttttttttt

Function

symbol description
sec61a1 Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Involved in pronephric nephron development. Acts upstream of or within habenula development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including axis; digestive system; hatching gland; midbrain hindbrain boundary; and polster. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).

NR:

description
PREDICTED: protein transport protein Sec61 subunit alpha-like 1

GO: NA

KEGG:

id description
K10956 SEC61A; protein transport protein SEC61 subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012915 True 2580 mRNA 0.46 11 13954086 13960215

Neighbor

gene id symbol gene type direction distance location
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding upstream 1239 13940426 ~ 13952847 (+)
AMCG00012913 NA coding upstream 49941 13894668 ~ 13904145 (+)
AMCG00012916 echdc3,LOC106576218,LOC106609342 coding upstream 62521 13889708 ~ 13891565 (+)
AMCG00012912 NA coding upstream 71880 13863807 ~ 13882206 (+)
AMCG00012909 LOC106927059 coding upstream 168230 13773790 ~ 13785856 (+)
AMCG00012918 cdc123,LOC106576189 coding downstream 18333 13978548 ~ 13989776 (+)
AMCG00012920 NA coding downstream 82044 14042259 ~ 14061913 (+)
AMCG00012921 camk1d coding downstream 118109 14078324 ~ 14102726 (+)
AMCG00012923 NA coding downstream 186272 14146487 ~ 14152861 (+)
AMCG00012922 NA coding downstream 203452 14163667 ~ 14175623 (+)
G40824 NA non-coding upstream 68897 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 692907 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 838554 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 838833 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 1211392 12741174 ~ 12742694 (+)
G40846 NA non-coding downstream 26735 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 225025 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 380731 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 435361 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 437382 14397597 ~ 14397855 (+)
G40629 NA other upstream 1418157 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1453684 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3412126 10540728 ~ 10541960 (+)
G40224 NA other upstream 3509639 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4823875 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 468098 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 556568 14516783 ~ 14529806 (+)
G41059 NA other downstream 672142 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1121204 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1337747 15297962 ~ 15317344 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G490858 NA non-coding CI01000340 null 9427520 ~ 9432764 (+)