AMCG00012916 (echdc3,LOC106576218,LOC106609342)


Basic Information

Item Value
gene id AMCG00012916
gene name echdc3,LOC106576218,LOC106609342
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 13889708 ~ 13891565 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012916
AATATAGTCCTCAATAACCCCAAGAAGAGAAACGCTCTGTCCTTGTCCATGCTGGAGTCTCTACGCGCTGATATCCTGCACGAGGTGGACAGCGCAGACCTCCGAGTCATCATCATCTCAGCCAAAGGGCCCGTCTTCTCGTCAGGCCACGACCTGAAGGAGCTGACGTCGCAGCAGGGCAGTGAGCACCACGGCAGGGTGTTCGAGGTCTGCTCGGAGGTCATGACCTTGATACAAGATGTTCCTGTACCGGTAATCGCTCAAGTCAAAGGCATGGCCACAGCTGCAGGGTGCCAGCTTGTTGCCAGCTGTGACATTGCAGTCGCTTCGGAGAAATCGACGTTTGCCACCCCTGGAGTGAATATTGGGCTGTTCTGTTCGACGCCTGCTGTTGCCATTGGAAGGGCTGTACCCAGGAAGGTGGCCTTGGAAATGCTCTTCACTGGAGCTCCCATCTCTGCCCAGGATGCTTTGCTCCATGGGCTCGTCAGCAAGGTGGTGCCGGAGGAGAAACTGGAGGAGACGACATTGGCCATCGCCCAGAAGATCTGTTCTGCCAGCCGACCTGTGGTGGCCCTGGGCAAGGCCACCTTCAACAGACAGATGGCCCAGGGGCGCCACGCCGCCTACGCAACTGCCTCCCGGGTGATGGTGGACAACTTGGCTCTGACAGACGGGCAGGAGGGCATCAGAGCCTTTATTGAGAAGCGCAGACCCGTGTGGACACACGGCACAGACAGAGTCCATGAGTAG

Function

symbol description
echdc3 Predicted to enable catalytic activity. Predicted to act upstream of or within fatty acid metabolic process. Predicted to be active in mitochondrion. Orthologous to human ECHDC3 (enoyl-CoA hydratase domain containing 3).

NR:

description
PREDICTED: enoyl-CoA hydratase domain-containing protein 3, mitochondrial isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012916 True 753 mRNA 0.58 4 13889708 13891565

Neighbor

gene id symbol gene type direction distance location
AMCG00012912 NA coding upstream 7502 13863807 ~ 13882206 (+)
AMCG00012909 LOC106927059 coding upstream 103852 13773790 ~ 13785856 (+)
AMCG00012911 NA coding upstream 129110 13751149 ~ 13760598 (+)
AMCG00012910 celf2,LOC106927059,LOC103382440,LOC107092344,LOC106576215,LOC106609337 coding upstream 145812 13714322 ~ 13743896 (+)
AMCG00012908 gata3 coding upstream 875121 12994590 ~ 13014587 (+)
AMCG00012913 NA coding downstream 3103 13894668 ~ 13904145 (+)
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding downstream 48861 13940426 ~ 13952847 (+)
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding downstream 62521 13954086 ~ 13960215 (+)
AMCG00012918 cdc123,LOC106576189 coding downstream 86983 13978548 ~ 13989776 (+)
AMCG00012920 NA coding downstream 150694 14042259 ~ 14061913 (+)
G40824 NA non-coding upstream 4519 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 628529 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 774176 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 774455 13114893 ~ 13115253 (+)
G40710 NA non-coding upstream 1147014 12741174 ~ 12742694 (+)
G40846 NA non-coding downstream 95385 13986950 ~ 13988088 (+)
G40920 NA non-coding downstream 293675 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 449381 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 504011 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 506032 14397597 ~ 14397855 (+)
G40629 NA other upstream 1353779 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1389306 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3347748 10540728 ~ 10541960 (+)
G40224 NA other upstream 3445261 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4759497 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 536748 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 625218 14516783 ~ 14529806 (+)
G41059 NA other downstream 740792 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 1189854 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1406397 15297962 ~ 15317344 (+)

Expression


Co-expression Network