AMCG00012921 (camk1d)


Basic Information

Item Value
gene id AMCG00012921
gene name camk1d
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14078324 ~ 14102726 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012921
TCTACTCTTGTGCTCCCCAGAGTCTCTGGAGGCGAGCTGTTTGATCGAATCGTGGAGAAAGGCTTTTACACCGAGAAGGATGCGAGCACGCTGATTCGGCAGGTCCTGGATGCAGTCAATTATCTGCACAAGATGGGAATTGTGCACCGGGATCTCAAGCCAGAGAACCTGCTCTACTTCAACCCTGCCGACGAGTCCAAGATCATGATCAGTGACTTTGGGCTGTCCAAAATGGAGGGAACGGGAGACGTCATGTCCACAGCGTGTGGGACCCCAGGCTAtgtggCCCCTGAGGTGTTGGCTCAGAAGCCCTACAGCAAAGCAGTTGACTGTTGGTCCATTGGTGTCATAGCTTACATTCTgtTGTGTGGTTACCCTCCATTCTACGATGAAAATGATTCCAAGCTGTTTGAACAGATTTTAAAGGCAGAGTACGAGTTTGATGCTCCATATTGGGATGACATATCGGATTCTGCTAAAGATTTCATTAGCAGTTTGATGGAGAAGGATCCCAATAAGCGGTACACATGTGAGCAGGCTCTGCGACACCCCTGGATTGCTGGAGACACGGCTCTGTGCAAGAATATACACGAGTCCGTGAGTCGCCAGATTCGGAAGAACTTCGCAAAAAGCAAATGGAGGCAAGCCTTCAATGCCACCGCTGTGGTCAGACACATGAGGAGACTGCACCTGGGCAGCAGTATAGAGGGGTCACAACACCAGAACGCCGTGACCACCCCCCACCTCAACAGCCCTCCGACCGACACAATGACTCGCAAGGACTGCATGTCCCCCTCCGCTCCCTGCAGCCTGGTGTCGGcagcctcctccccctccccagtgGGAGGAGAGCACAGGCCCCGGCCGTCCACAGTCACCACAGTGCACACCGGGAGCAAGTGATGCCCAGCCCTGCAGGGAGCCACGTGGGAGGCCACGGCGCTGTGAGCGGTGCCCCTGCTTTCTCTCGGAGGTCCCACGCTGTCAGCTGCACTGACACCTGGGAAGACGGGAAGAGCAGAAGGGTTTTTATGGCCATATTTTATACTGCAACTACTGGAGAGTCTCATTTATCATGGAACGTGCATTGAACTGTATCATAATGAATTTTATCACTATCCAGCTCTTTGCATATTCTGGTTAAATAGGGGGGATGCTGTTTGTATGATTTTGATCGTTATTTTtgctattgtgttttttttctctgtttgtttgtttgtttgtttgtttgtttgtttcagtcttGATTACCAAGTTCTACAGTGTCACGTTTTGGTAGATTGTGGTTTGGGGTTTTGTACGTTTTCAACGCTGATCTATGTGCACATGACAAAAAGTGCTTTAAggatttaagaaaactggagGGGTATTTTCTCAAGTAATTACTTGAAGTAGCTTTTGACAAGTTAAGACAGATGTAACTCCTAGATAAAGCTACActtgtatgtttgtgttatcATTGATTTGCCAGGTGGTTTTAGATTGTAAGCAGCTTACATCCCACAATGGGGTTATAGCATTGTAaaaatttgcatatttgttaaTTGAAACGGTaacatgtttcattattttcttaaattaaaaaaaacttttgtaaatcattaagaaaatataatattcatataattatgtttttagaaTTAAGTTTCTGAAGTCAGCTTTTGAATAGAGGAACGATTTAAGATGACACGTTAgtcttaggaaaaaaaaaagcctataGATCCACTTATCCTAAGCTTATTTAAGATCCTGTATTAACTTGTAAAGtcctcttttgtgtttttctgaaatatCATAGATTGTGTTTGAACTGCTAGTTCTCAGGGAAATTGGTAACTATAATTGGGttcaagatgttagacctaatATACAATTGGAAAATCCAGTATTATGTATGTACTCTAACTGATACAATATCTAAATTGGGCGGACTGTGAGTAAAGTTACTCGGGTTTtatcatcttttctttttgttagtCTTGCCTCAGTGTCATCTCACTTAAACTTGAAAGTGATAACAAAAAGGTACAAAAGATGAACTAATTTATACTTAAGTGCCATTGGTGCGTTTTGGTTTCAGAAGACCATATTCATAAAACGTTTACTGATGAGCTAAATTGACACCTGAAACCAATAAATAAGATGGTGAAGAGTCACATCAGACTGTCAGAGCGCTAAACTGAGTTAACAAAAGCATATGAAATGcactgtttttcattgtgtaccatttgtgttttgtttttcatcttttacTAAACGTGaacattttatgaatatggcttgaatattttattttgaaatgctgtaatacaatttcttaaaagtatatatatatcaccaggTCTGGAGGAAatgttaaaaactgaaaacacaaataactgtTAGTTATCCTCGATGTAGTTTACCCAAAAGAAAGCAAGGTGCCAATGATAGTGTTGCACAGTGACCTTTTACTGAAAACTCTTTGACTCGAATGACACTTGAGCACATACATACAATCTGCGTTTGTTGTTACCTTTCAGTTCTACCTGCAAGTACGGCTTTACCAGCACCTATGCACAAAatgttatttgcattttctttcatatttccTTTAGTGTACAAGCCTTAGTGAGCATCAGGCCAATAAGGCTGGCTTTGCAAACTCACATACAACCTAACATCAGACTTCATCACTCATTTAGCCCCTTCATCTCCTTCATAATGGAAACATTATGTCATACCTGGATGCATTTcacattgtacaaattccaccgtgacattttttacattttaacaaatgttcCTTTTCCCACAAAACAGAAGACAtcttattgtgtttttctttcacaaaactgtatttaattgcaaacaaaaatgtattaaaataatatagatagataaatgtTGGTTTTAGGCATTACAAATAATTGggttattaaataaacataaatctCAAATGCCCCTGaatgtaactttaaaaatagTAATCTAGTTTTACTTTAAGGAATAATTTCTACTTCATTAAATCCTGATTCTTGACATCACTGAAGGATGTTGTTGCAGACGTTTTCTGAGCCTCCTTCACTGCTTCAGTCTGTTCTGAGGTACATGACCAAAATTGGTAATCCAGTTCTGCTGCACCTTAGAATAGATTAGCCCAACCTCTTTGCTTACTTTtgcctttccttttctctttccttttttctttttctttctttctgtttgtttatttgtttctctcgTTGTTTTAAACAACCATGAGAACTGTCAgtacacttatttttttaagttagagCTGTAATCTGCACCGAGCAGGCAATATGTTTGGTGTAGTGGGCATCGCACAGATATGTTCATCTGACGAAACAATCAAAGCTGTACAATATTGTGTGGTTGAACTGAATAAATTCTGTGGTTGGCAGAGACCGCAAGAGCTGCATTTTCTGAagacattttttctttaaaggacAACCTAACTCttcctctatttatttattttctcttttatttgatACTCTTTTACTTTCAaatattacttttgtttgttatgtagTCAATTTTCATAAAAATGAAGATGGCAATCCTTCAAATGAAGTTGTG

Function

symbol description
camk1d Enables calmodulin-dependent protein kinase activity. Involved in several processes, including positive regulation of CREB transcription factor activity; positive regulation of phagocytosis; and positive regulation of respiratory burst. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: calcium/calmodulin-dependent protein kinase type 1D

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012921 True 3582 mRNA 0.39 8 14078324 14102726

Neighbor

gene id symbol gene type direction distance location
AMCG00012920 NA coding upstream 16411 14042259 ~ 14061913 (+)
AMCG00012918 cdc123,LOC106576189 coding upstream 88548 13978548 ~ 13989776 (+)
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding upstream 118109 13954086 ~ 13960215 (+)
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding upstream 125477 13940426 ~ 13952847 (+)
AMCG00012913 NA coding upstream 174179 13894668 ~ 13904145 (+)
AMCG00012923 NA coding downstream 43761 14146487 ~ 14152861 (+)
AMCG00012922 NA coding downstream 60941 14163667 ~ 14175623 (+)
AMCG00012926 cdk17,LOC107658862,LOC107656329 coding downstream 125912 14228638 ~ 14259163 (+)
AMCG00012929 lta4h coding downstream 196682 14299408 ~ 14313229 (+)
AMCG00012930 hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645 coding downstream 213115 14315841 ~ 14324873 (+)
G40846 NA non-coding upstream 90236 13986950 ~ 13988088 (+)
G40824 NA non-coding upstream 193135 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 817145 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 962792 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 963071 13114893 ~ 13115253 (+)
G40920 NA non-coding downstream 82514 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 238220 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 292850 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 294871 14397597 ~ 14397855 (+)
G41054 NA non-coding downstream 522526 14625252 ~ 14625850 (+)
G40629 NA other upstream 1542395 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1577922 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3536364 10540728 ~ 10541960 (+)
G40224 NA other upstream 3633877 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 4948113 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 325587 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 414057 14516783 ~ 14529806 (+)
G41059 NA other downstream 529631 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 978693 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1195236 15297962 ~ 15317344 (+)

Expression


Co-expression Network