AMCG00012923


Basic Information

Item Value
gene id AMCG00012923
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14146487 ~ 14152861 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012923
ATGTCTTCCAATACCCCAATGGTGAATGGGCATGTTCCCTGTGGGCCTTTGGGTGCCGATGCTGGGATGGTGGTTGCAGCACAGGCCTCTGCCCATGTTGGCTCCCCGGAGGAAACTCTGCAGCAAATGAACATACTGATCAAAGAAAACAGCGACTTAAAAGAGGCTCTGAAGCAGACGAACACAGCCATGAAGGAGCGATTCGAGGGCCTTGCTGTTTGGAAGGACAAGCAGAAGGAGGAACGGGATTTCCTGGAGCATAAACTACAGGAAGCGAAGGACCGCATTAATGCCCTGACCAAGCGCAACGAAGATCTCAGGAAGAAATTGCAAGCACTTGAAGGGAGTGTGGAGGGAGCCTGTCAGGCTGAGAAGGATGACCTGGTGGCCATGAACTCCGAGCTGCAACTTAAGCTCGGCCATGGCTCACCTGATGACTCCTTTATCGAAATCAGAATTGCAAAGGAAGGTGACCTGAAACTTGCTGAAAATTTGCCACACAACCAAAAAGACCCATCTGCTGCATATGTGCCAAAGTTTGATGAAACACGCTTGGAGTCGGAAGAGTTGACTGTCAGCCAGCTGCTCCAGTCCCTGCGACGTGAGTCCCAGAAGGTGGAGAAACTTGAACTTGAGCTTCAGGCTTCAAGAGAGAGaaTATCCGAATTTGAGAAAAAGGCAGGAATGGTGGCTGAGAGTGGGACTCAGACATCACTGAGAGTTGAAGAAGAGCCTTGTGCAGAAGCCAGATCTGAAGCTGATGTAAAAACTCAACAGAGTGCTCTGCAGGATACATCTCCCACAGAGGTGGAGAACCTGAGGTCTCAGATGATGATGTTGTTTAAGGAACTGCAGCAGGCGCAGGCCAAGCTGGACGAGGctgaaaatatgaagaaaaatctGCATGACCGATGCCGTGATATGGAGCAGGATCTTTCCACTCTCCGTGCGCAGCTGCTGGACAAACAGCAGGTTCAGAACGAGAACGAGAAGCTGAGGCTGCAGGTGGACAGCATGCAAGCTGTCAGTAAACTGGAACAGAGACAGATAGAGGAGGAAAAGAAGAAGATGGGTCAGTTAAAGGATGCCTATACTAAGCTTTATGAAGACTATAATGAAATGAAGAAGAGTCAGGAAGAAAAGAAGAGAGCAGAGaTCTCCAGGGATGAGGTGAGCGAGCTGACCGCGAGGCTCTCAGCAGCCGAGAAGGCCCTGGCAGCCAAGCAGCTGCAGATCGACGAAATGAAGCAGGACATCTTCAAGAAGGAGCAGGAGCTGGAGACCGTTTCTGTGTTCAAGGCTCAGGCTGAGGTGTATTCTTCTGACTTCTACGCCGAGAGACAAGCCCGGGAGAAGATCCACGAGGAGAAGGAACGGCTGGCAGCACAGCTGGAATTTGTGAAGAAGCAGAACAGCCAGCTGCAGGAAGAGATGGAGTCTCTCGGGAGACAATCTATGACTGAGCTTCAACGTCGTCATGTTTCCAGAGGCGCAAATCCCAATGGGCAACATAGTATGCAAGGAGCAAGAGgtgcagacagacaggactGGCAGCAGGGCCATATTCCAGAGCATGCTTGTCCTAAATGCAATGAAATCCTGCCTGACCTTGACAGCCTGCAGATACACATAATGGACTGCATCATATAA

Function

GO: NA

KEGG:

id description
K19946 OPTN, FIP2; optineurin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012923 True 1650 mRNA 0.50 13 14146487 14152861

Neighbor

gene id symbol gene type direction distance location
AMCG00012921 camk1d coding upstream 43761 14078324 ~ 14102726 (+)
AMCG00012920 NA coding upstream 84574 14042259 ~ 14061913 (+)
AMCG00012918 cdc123,LOC106576189 coding upstream 156711 13978548 ~ 13989776 (+)
AMCG00012915 sec61a1,LOC107748391,LOC107667387,LOC108271933,LOC103358725 coding upstream 186272 13954086 ~ 13960215 (+)
AMCG00012914 dhtkd1,LOC107569696,LOC104963732,LOC107740898 coding upstream 193640 13940426 ~ 13952847 (+)
AMCG00012922 NA coding downstream 10806 14163667 ~ 14175623 (+)
AMCG00012926 cdk17,LOC107658862,LOC107656329 coding downstream 75777 14228638 ~ 14259163 (+)
AMCG00012929 lta4h coding downstream 146547 14299408 ~ 14313229 (+)
AMCG00012930 hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645 coding downstream 162980 14315841 ~ 14324873 (+)
AMCG00012928 NA coding downstream 179921 14332782 ~ 14340902 (+)
G40846 NA non-coding upstream 158399 13986950 ~ 13988088 (+)
G40824 NA non-coding upstream 261298 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 885308 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 1030955 13115312 ~ 13115532 (+)
G40776 LOC107575789 non-coding upstream 1031234 13114893 ~ 13115253 (+)
G40920 NA non-coding downstream 32379 14185240 ~ 14186136 (+)
G40963 NA non-coding downstream 188085 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 242715 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 244736 14397597 ~ 14397855 (+)
G41054 NA non-coding downstream 472391 14625252 ~ 14625850 (+)
G40629 NA other upstream 1610558 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1646085 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3604527 10540728 ~ 10541960 (+)
G40224 NA other upstream 3702040 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 5016276 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 275452 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 363922 14516783 ~ 14529806 (+)
G41059 NA other downstream 479496 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 928558 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1145101 15297962 ~ 15317344 (+)

Expression


Co-expression Network