AMCG00012926 (cdk17,LOC107658862,LOC107656329)


Basic Information

Item Value
gene id AMCG00012926
gene name cdk17,LOC107658862,LOC107656329
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14228638 ~ 14259163 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012926
ATGAAAAGATATCTCGGCAGTGCATCTACAGATGCTGGTGGTATAAGTGGAGAGAAATGGGCTGTGGCCGTAGTTTCAGGCGTGGCCCGGGAGGAGGAGCACCAAATGGAAAAGATGAAGAAATTCAAGCGGCGGCTCTCCCTCACCTTGCGTGGGAGCCAGACAGTCGACGAGTCCCTGTCTGAGCTGGCCGAGCAGATGACCGTCGAGGAGAACAGTATCAAGGACAATGAGCCCATCGTGAGGAATGGCCGCCCCCCCACGTCGCACAGCATGCACTCCTTCCTGCACCAGTACACCGGCTCCTTCAAAAAGCCACCGCTGCGCAGGCCCCACAGCGTTATCGGCGGCAGCCTCAGCTCCTTCATGGCTATGCCTAGGAACGGCAGCAGGCTAGACATTGTGCATGAGAACCTCAAGATTGGCTCGGATGGCGAGAGCGACCAGGCTTCTGGCACGTCTTCAGATGAGGTGCAGTCTCCCACGGGCGTGTGTCTGAGGAGCAGGGTGCAACGCCGCATCTCCATGGAGGACCTCAACAAGCGTCTGTCCCTCCCTGCGGACATCAGGATACCAGACGGCTACCTGGAGAAGCTGCAGATGAACAGCCCTCCCTTCGACCAGCCAATGAGCCGGCGGTCTCGCAGGGCCTCTCTGTCTGAAATTGGGTTTGGGAAGCTGGAGACCTACATCAAGCTGGACAAACTCGGAGAGGGAACATACGCAACGGTTTTCAAGGGCAGAAGCAAACTGACAGACAACCTGGTGGCACTGAAGGAAATCAGGCTGGAGCATGAAGAGGGAGCCCCCTGCACAGCCATCAGAGAGGTGTCGTTACTAAAGGATCTGAAGCACGCAAACATTGTGACGTTACACGATATTGTTCACACGGACAAGTCACTCACGCTAGTCTTTGAGTACCTGatCTTCTTGTTTCAAATTCTGCGGGGGCTGGCGTACTGCCATCAACGGAAAGTATTGCATCGGGACCTGAAGCCGCAGAATCTGCTCATTAATGAGAGAGGGGAGCTCAAACTCGCAGATTTTGGACTAGCAAGAGCCAAGTCTGTCCCAACGAAGACCTATTCCAACGAGGTGGTGACGTTATGGTACCGCCCCCCCGATGTGCTGCTCGGGTCCTCGGAGTACTCCACACAGATTGACATGTGGGGTGTGGGCTGTATATTCTATGAAATGGCCGCTGGCAGGCCTCTGTTTCCTGGCTCGACGGTGGAAGACGAGCTGCACTTGATTTTCAGACTCCTAGGCACTCCTTCGGAGGATAACTGGCCAGGAATATCATCCATTGAGGAATTCAAATCATACAACTTCCCCAAGTACAAACCCCAGCCGTTCATTAACCACGCGCCAAGGTTGGACTCTGAAGGAATTGAcctgttgttaatgtttttacaatatgaatCCAAGAAAAGAATCTCGGCGAATGAGTCTATGAAGCAGCCCTACTTCAAGAGCCTGGGATCAAGGGTCCACACATTGCCTGAGAGTGTGTCTATTTTCACCCTGAAGGAGGTGCAGCTGCAGAGGGACCCTGGCTTTCGCAGTTCGTCATACCCAGAAACAGGTAAAGACCGGCAGCCGCTGGGCGTGGGAGCTGTCCTGATACAGGCCTTCTGTTGTGCCAGAGTGCAGATCAAGTCTCGGGCTTGCAAACCATAA

Function

symbol description
cdk17 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to be involved in protein phosphorylation and regulation of transcription involved in G1/S transition of mitotic cell cycle. Predicted to act upstream of or within phosphorylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CDK17 (cyclin dependent kinase 17).

NR:

description
PREDICTED: cyclin-dependent kinase 17

GO: NA

KEGG:

id description
K15595 CDK17, PCTK2; cyclin-dependent kinase 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012926 True 1680 mRNA 0.54 15 14228638 14259163

Neighbor

gene id symbol gene type direction distance location
AMCG00012922 NA coding upstream 53015 14163667 ~ 14175623 (+)
AMCG00012923 NA coding upstream 75777 14146487 ~ 14152861 (+)
AMCG00012921 camk1d coding upstream 125912 14078324 ~ 14102726 (+)
AMCG00012920 NA coding upstream 166725 14042259 ~ 14061913 (+)
AMCG00012918 cdc123,LOC106576189 coding upstream 238862 13978548 ~ 13989776 (+)
AMCG00012929 lta4h coding downstream 40245 14299408 ~ 14313229 (+)
AMCG00012930 hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645 coding downstream 56678 14315841 ~ 14324873 (+)
AMCG00012928 NA coding downstream 73619 14332782 ~ 14340902 (+)
AMCG00012934 NA coding downstream 106935 14366098 ~ 14395069 (+)
AMCG00012935 NA coding downstream 146395 14405558 ~ 14419258 (+)
G40920 NA non-coding upstream 42502 14185240 ~ 14186136 (+)
G40846 NA non-coding upstream 240550 13986950 ~ 13988088 (+)
G40824 NA non-coding upstream 343449 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 967459 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 1113106 13115312 ~ 13115532 (+)
G40963 NA non-coding downstream 81783 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 136413 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 138434 14397597 ~ 14397855 (+)
G41054 NA non-coding downstream 366089 14625252 ~ 14625850 (+)
G41058 NA non-coding downstream 369420 14628583 ~ 14630610 (+)
G40629 NA other upstream 1692709 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1728236 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3686678 10540728 ~ 10541960 (+)
G40224 NA other upstream 3784191 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 5098427 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 169150 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 257620 14516783 ~ 14529806 (+)
G41059 NA other downstream 373194 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 822256 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 1038799 15297962 ~ 15317344 (+)

Expression


Co-expression Network