AMCG00012930 (hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645)


Basic Information

Item Value
gene id AMCG00012930
gene name hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14315841 ~ 14324873 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012930
TGATTGGTGGCcgtgtctgtccgtctgtccgtctgtccgtcgGGATGCGCAGCTACAGGTAAAAGCGCCGCTCGCCCCGCTGGAGGGAGGTACTGCGGCTGCCCCTCTGAGCAGCGATGCCCCGCTTCACAGTGCATGTGCGGGACGAGTGGCTCACCGTCCCCTGCAAGGACGCTTCCTACACGGTGCAGTGGCTGGGGGTGGAGGCTCTGCGGCGATACGCCAAGAATAAACCCGACAATGGGGGCTTCAGCTCGGTGAAAGAGGTCCGCTTCTCCGTGCGGCGCTGCCAGGGACAGGGGCTGCTGGACGCGGACGACACTATAGAGGACGTGCTGGAAGACAACGATTTTATCGAAATAGTGATCGAAGGAGATACGATGCCTCAGGATTTCATCCCATCTCAGCCAGGAGCGTCTTATCTTACCTCATCCTACCGAGAACCCGATGAATATATTTTCTTGGATGGCAACCATCTCACTTCAAAGGATCTAATCAATTTAGGGAAAGGGCTCTACAAGATTAAGctTACTCCAGAAGCAGATAACAGAGTTGCACAATCCAGGGAACTTCTAGAAAACATTGTCAAGGAAAATAAAGTCGTTTATGGAATCACGACAGGATTTGGCAAATTTGCACGAACAGTTATACCGAATAGTAAACTCAAGGAATTACAGGAAAACTTGGTTCGATCTCATTCAGCTGGTGTTGGGAAGCCACTGAGCCCTGAGCGCTCCCGGATGCTCCTGGCCCTGAGGATCAACGTCCTGGCCAAAGGCTACAGCGGCATCTCCCCCGCCACCCTCCATCAAATGGTCGAGGCCTTCAATGCCTCCTGCCTGTCCTACGTCCCTGAGAAGGGGACGGTCGGGGCCAGTGGAGACCTTGCCCCCCTGTCGCACCTGGCCCTGGGGCTGATGGGAGAGGGCAAGATGTGGTCACCAAAGAGCGGATGGGCCGATGCCAAATACGTGTTGGAGGCTCATGGACTGTCTCCCATATCATTGAAGCCAAAAGAGGGCCTGGCCCTCATCAATGGGACCCAGATGATCACGTCTCTGGGCGCGGAGGCCGTGGAGAGAGCCCAAGCCATCGCCAGGCAGGCTGACATCATCGCAGCCCTCACACTGGAGGTGCTGAAGGGAACCACCAAGGCCTTCGACAGTGATATCCATGAGCTGCGGCCTCACCCTGGGCAGAAAGAGGTTGCCTTCAGGTTCCGATCCCTGCTGGACTCCGACCACCACCCTTCAGAAATTGCAGAGAGCCACAGATTCTGTGATAGAGTTCAGGATGCATATACCTTACGCTGCTGTCCTCAGGTCCATGGAGTGGTCAATGACACCATAGCTTTTGTCAAGAACATCATCAACACAGAAATCAACAGTGCCACCGACAACCCTATGGTTTTtgctgagagaggagagacgaTTTCAGGAGGCAATTTTCATGGCGAATATCCAGCTAAGGCTCTGGACTACCTGGCCATTGGGGTGCACGAGCTGGCCTCCATCAGTGAGAGGAGGATTGAGCGGCTGTGTAACCCCTCTCTGAGCGAGCTGCCCGCATTCCTGGTCAGCGAGGGCGGCCTGAACTCAGGGTTCATGATCGCCCACTGCACTGCTGCGGCTCTAGTGTCGGAGAATAAAGTGCTGTGTCACCCCTCTTCTGTGGACTCCCTGTCCACCAGTGCTGCCACTGAGGACCACGTGTCCATGGGTGGCTGGGCGGCCAGGAAGGCCCTCAAAGTGCTGCTGGCAGCCTGTCAGGCGATGGAGTTTCTCCGCCCCCTGAGGACGACCACCCCATTGGAGAAAGTCTATGACCTCGTCCGTGTCGTTGTCAAGCCATGGGTTAAGGATCGCTTCATGGCTCCAGACATTGAGGCCGTGTGGCAAGTAGCGCATCCCTACATAGAGAAGTACAGTCTGGAACACATTCCCGAATCTCGGCCCGTCTCGCCAACAGCCTTTGTGCTGGAATCCCCGGCGTCACCACGGAAACGCGTCCGTCACGAATGCGATCACTGACGAAAGGAAGACGAGCAATCCCAGCCACTATATTGTATATCTGTGTTAACAAAGTGATGAGATGACACTAACCAATCCCTTAGGGAAAAAACCCAACAACTCGTGTTTAAAGTACGCAAGCTTCAGTGcttcaaaatgtgcttttaatgttGAATCGCAAAGCAGCAGAAGATTTTAGTAGCACACTTGGACAGTGGCTGTTTTTATACCTTACGATTTTCGTACATCTAGGCACTCACGTTAGACATACTTAATTATCTATTTTAAGCAATTTCACTTCTTCATAGTGCAGCAGGTATTAAAGTTGTTTGCTTCTGGAATTTACACTTCaaatataaactttattttgaacttggtattatttgttaataaatgaAGATAAAACTGGTTGTGAATAAAATGTCTTGTTTCTAcctctgtttttattgtatacaACTGATGACTGGCTTAAGTGGCTCAATAAAATG

Function

symbol description
hal Predicted to enable histidine ammonia-lyase activity. Acts upstream of or within hematopoietic stem cell differentiation. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in histidinemia. Orthologous to human HAL (histidine ammonia-lyase).

NR:

description
PREDICTED: histidine ammonia-lyase

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0019557 histidine catabolic process to glutamate and formate biological_process
GO:0009058 biosynthetic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004397 histidine ammonia-lyase activity molecular_function

KEGG:

id description
K01745 hutH, HAL; histidine ammonia-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012930 True 2497 mRNA 0.52 20 14315841 14324873

Neighbor

gene id symbol gene type direction distance location
AMCG00012929 lta4h coding upstream 2612 14299408 ~ 14313229 (+)
AMCG00012926 cdk17,LOC107658862,LOC107656329 coding upstream 56678 14228638 ~ 14259163 (+)
AMCG00012922 NA coding upstream 140218 14163667 ~ 14175623 (+)
AMCG00012923 NA coding upstream 162980 14146487 ~ 14152861 (+)
AMCG00012921 camk1d coding upstream 213115 14078324 ~ 14102726 (+)
AMCG00012928 NA coding downstream 7909 14332782 ~ 14340902 (+)
AMCG00012934 NA coding downstream 41225 14366098 ~ 14395069 (+)
AMCG00012935 NA coding downstream 80685 14405558 ~ 14419258 (+)
AMCG00012936 NA coding downstream 108930 14433803 ~ 14451103 (+)
AMCG00012939 LOC103459300,LOC104941780 coding downstream 154203 14479076 ~ 14510489 (+)
G40920 NA non-coding upstream 129705 14185240 ~ 14186136 (+)
G40846 NA non-coding upstream 327753 13986950 ~ 13988088 (+)
G40824 NA non-coding upstream 430652 13883261 ~ 13885189 (+)
G40788 LOC107575789 non-coding upstream 1054662 13260644 ~ 13261179 (+)
G40777 NA non-coding upstream 1200309 13115312 ~ 13115532 (+)
G40963 NA non-coding downstream 16073 14340946 ~ 14344481 (+)
G40986 NA non-coding downstream 70703 14395576 ~ 14395899 (+)
G40989 NA non-coding downstream 72724 14397597 ~ 14397855 (+)
G41054 NA non-coding downstream 300379 14625252 ~ 14625850 (+)
G41058 NA non-coding downstream 303710 14628583 ~ 14630610 (+)
G40629 NA other upstream 1779912 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1815439 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3773881 10540728 ~ 10541960 (+)
G40224 NA other upstream 3871394 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 5185630 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 103440 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 191910 14516783 ~ 14529806 (+)
G41059 NA other downstream 307484 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 756546 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 973089 15297962 ~ 15317344 (+)

Expression


Co-expression Network