AMCG00012932


Basic Information

Item Value
gene id AMCG00012932
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14326065 ~ 14331802 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012932
CAGGTTTAtccctctttgcttttctgCGGGGTATTTACtgtcattaacaatgtctaAAGAATTTAAACTGCTTGTCAAAAACGCGAAACAAGTAGTTTTGGTTTGTAATAACGGCGAGAGATACCTAACGAAAGATGGGCTGCAACACATTGCACTGACTGACAATGCCAGTCTGGTAATCGGACAAGATGGTCTCCTGAAGGCTGTGGGGCCAGCTGACAGCATTGACTCTCAGTTCAAGGCTGcctcatttgaaaatataattgatgCCTCTGGAATGTGTGTCATACCAGGACTGATAGACGCACACACTCATCCAGTATGGGCGGGGGATAGGGTCCATGAATTTGCAATGAAGCTGGCAGGGGCAACATACATGGAGGTGCATGAGGCTGGGGGCGGCATCAACTACACCGTGGAGCACACCCGCCGGGCTGCCCCGGAGCAGCTGCTGGGCAGCCTGAAGCAGCGGTTGCTGAGGATGCTGAGGGCCGGCACCACGCTGGTAGAGTGCAAGAGCGGATATGGATTGGAGCTGGACACCGAAGCCAAAATGCTGTCTGTCATTGAGCAGGCTCGCCGGGAGCTCCCCATAGGCATCTCCGCCACATACTGCGGAGCGCATTCGGTGCCCAAGGGGAAGACTGCAATGGAGGCTGCCAACGAGATCGTTAAAGTTCATCTCCCGGCACTGAAAGACAAGATGTGCCAAGGCGAGCTCAGCATTGAGAATATAGATGTGTTCTGTGAGAAAGGCGTCTTTGACCTCAGCTGCACCCGGAACATTCTGCAGGCGGGAAAAGACATGGGGCTGCAGATTAACTTCCACGGGGATGAGCTTCATCCAATGCACTCAGCAGAGcttGGCGCTGAAATGAACGCCCTGGCTATTAGCCACCTGGAGGAAGTGACCGACGAGGGGATTACCGCCATGGCTCAAGCCAAAACCTCCGCTGTCCTCTTACCAACAACTGCCTATATCTTAAGGCTGAAGCAACCCAGAGCCAGGGCCATGCTTGATGCAGGGGTCATAGTTGCTCTGGGCAGTGACTTCAATCCCAACGCCTACTGCTGCTCAATGCCCATAGTCATGCACCTGGCCTGTGTCAACATGCGAATGGCAATGAACGAGGCTTTGGCTGCTGCCACCATCAACGCTGCCTACGCCCTGGGCCGGTCCCACTGCCAGGGCTCTCTAGAGGTCAACAAGCAAGGAGACCTCATCATCATCAACTCTACACGGTGGGAACATCTGATCTACCAGCTCGGAGGACACCAGGAGCTCATCCGCTATGTTGTTATCAAAGGAGTTGTGGTTTATGACAACAGCAACACCATGGACTACTAAACCACCTGTATATCTGTGTACCTGTGTGCATGTCGAAGGGAAATGTAATTGACCTCAATTAGAATATCATCACCTTTTGGCATTTTCCTTCATAATTGATATACACTGTATTGTAAAAGAGTTACTGATGTTTTCCCTTGGTAATTATGTATCTGTATAGCTGTTCTCATGAAGTTCTTTTCCAGACATCTGATGTTTAAGTATAATTAGAAGCATTCCTGTCTTTCAAAAATAGTACACTTGTGATTGATACCTTGAATGAAATACACACGAATCCCAGAGGCCATAGAGCAATAACCCTTCATTTCTAACCTGCAGGTCTTTTTCAATAAAACCTATTCAGATAGGTTAACCTATGCTGTCTCTCATTGTCATGTGCACCCAGTGCATATTTATCTGTATAGTTtctgcatttgtattgttatcCTCTGCTTGTTGTTCCTACTTGTAAAATTCCTAGCCATACACACCACTATTGACACAGCGTATCAGGGGATTATTTACAGTGGTCAGTTTTGTCTCAGTtctttgaaatcaaatctacatTATCTACAAAGCaagacctttttgttttctaaagctAAACTTTTCTGATATTTGAAGGTatgtaaataatgaatgaatattaACCATCAGATCTAGGTCACTGTGGATAATGTAACGTTCTGTGCTTTGAAGGTTTAAAAATTAATCAAGTTTGAGTCTGAACCAAAAAAAGCCTTTGAGAACCTAAACATCAATATATGGGAGGTAATTCCCATCTTTCCAACAAACAATAAACTCAGACTGCTgtgtatatatcatattattactgaagaatctttttttttcaatacaaaggAATATGAAATACACACGTACCTAAAGACTACTTACATATAGTACCTTAAGAATAAACAGACTATCACAA

Function

GO:

id name namespace
GO:0019556 histidine catabolic process to glutamate and formamide biological_process
GO:0005737 cytoplasm cellular_component
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG:

id description
K01468 hutI, AMDHD1; imidazolonepropionase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012932 True 2258 mRNA 0.45 9 14326065 14331802

Neighbor

gene id symbol gene type direction distance location
AMCG00012933 NA coding downstream 45344 14262518 ~ 14280721 (-)
AMCG00012927 phyh,LOC103369277,LOC102790656,LOC103375892 coding downstream 135978 14186362 ~ 14190087 (-)
AMCG00012924 NA coding downstream 145125 14175380 ~ 14180940 (-)
AMCG00012925 NA coding downstream 182716 14119619 ~ 14143349 (-)
AMCG00012919 nudt5 coding downstream 350370 13973467 ~ 13975695 (-)
AMCG00012938 metap2 coding upstream 93009 14424811 ~ 14433156 (-)
AMCG00012937 NA coding upstream 120613 14452415 ~ 14474581 (-)
AMCG00012944 NA coding upstream 343283 14675085 ~ 14702602 (-)
AMCG00012943 socs2,LOC107590271,LOC107732999 coding upstream 425999 14757801 ~ 14772607 (-)
AMCG00012948 NA coding upstream 463240 14795042 ~ 14796838 (-)
G40941 NA non-coding downstream 29289 14296574 ~ 14296776 (-)
G40903 NA non-coding downstream 219795 14099946 ~ 14106270 (-)
G40892 NA non-coding downstream 339353 13985178 ~ 13986712 (-)
G40860 NA non-coding downstream 366245 13958804 ~ 13959820 (-)
G40868 NA non-coding downstream 440890 13883597 ~ 13885175 (-)
G40966 NA non-coding upstream 7112 14338914 ~ 14339228 (-)
G40967 NA non-coding upstream 7546 14339348 ~ 14339810 (-)
G41030 NA non-coding upstream 176755 14508557 ~ 14510685 (-)
G41020 LOC107748465 non-coding upstream 196352 14528154 ~ 14529773 (-)
G41047 NA non-coding upstream 256043 14587845 ~ 14588126 (-)
G40778 LOC107575789 other downstream 1210578 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 1419732 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 2054276 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 3463743 10857881 ~ 10862322 (-)
AMCG00012858 NA other downstream 3572367 10740354 ~ 10753698 (-)
AMCG00012931 snrpf other upstream 8614 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 1387711 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 2298429 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 3548423 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 3598096 17929898 ~ 18046714 (-)

Expression


Co-expression Network