AMCG00012933


Basic Information

Item Value
gene id AMCG00012933
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14262518 ~ 14280721 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012933
ATGAAGAGGTTCCTGGTGGCAATGTTTCATGTGGAAGGGGACAGAAATGTATATGTGGAGGCACCACCTAGAAATATCATCAAGAAGGTGATTGGACAAAAATTTGTCTACAAATTTGTGTCCTTCCCCGAGATCCTGAAGATGGACCCACAGACGGTGGAGATGGGAAGAGAGGGTGTGCTCCTGCAGGACCCCGACTCCTTGGGCCTGGACGCCAAGGAGTCTCACAAACTTCCCCTGGGCGCCCTAAGGGCGGCCGGCCGTAACGACTACATTCACTCAGGCCTGTATTCCTCCTTCACCATCAACTCCCTGCAGAACCAGCCGGAGCTCTTCAAGGCCATCAAGGTGGAGAAGCAGGATGAGCGCGCGGAGGGGAAGCTGGCAGGAGATGAAGTGAGGACTGTGATCCGCTTCGTAACCAACAAAACCGACAAGTTGGTGGTGTCGGTGCCGTCCTCTCCCACGTCCTCGGCTGAGGCCACAGCGGCATTCCTGAGCTCATCCCTCTCTGCCAAATCCTCCCCCTCCTTGATGTCGGCTCATGCCACGCACCTCTGCTCgcgctccccctcccccagccctTCCTTCCTGTCGGGAAGCCGGAGCCCCGACCTGGAAGCAGATGACTTAGAGCAATGTGCCCAGCCTCTGAACCTCTCCGCCAGCCGCAAGGCCAGGTCCCCTCATGTGACTGAGAAGCGGAACGTGGCCGCCCTTCCTCCCAAAGCCAAGAAACCCAAAGGCCTGGAAATCTCTGCCCCCTCGTTGTTACTCTCAGGCACTGATATTGGCTCCATTGCCCTCAACAGCCCAGCACTTCCCTCAGGGTCTCTGACACCAGCCTTCTTCACTGCACAGCAGACGCCAGGCCTCGAGTGTAACCTGTCGATGCTGACCTGTGTTCTCCTGTCTTCACAGACGCCCACGGGGTTGTTATTAACTCCCAGTCCCTTATTGTCCAGCATTCACTTCTGGAGCAGCTTAAGCCCAGTGGCCCCTCTGAGTCCTGCCAGGCTGCAAGGACCCGGCTCCTTATTCCAGTTTCCCACGCTGTTAAACGGCCACATCCCCATGCAGATCCCCGGGCTGGACGGGTCCCCCTCTCCGCTGCTGCTGTCGCAGAGTCACAAGTCCTGACTTTCAGCCTCAGCACACCAGCaatgaagacttttttttttttatgtgaaaccCAAATCCGCTTTTGGTTTTTGCACACTGACGGTATACAGACACATACAagactttttcttcttttaaacatttattttttaaccatgaCAAGAAGCCCTTGCTGTTCGAGGTGTTTGACACTTCGCACCGATCTCCACTCCTAGGTGTGTTAAGGTTGCCAATGGAGGCTGTGAATCCGTGCCCTGTCCTTTGATGTTTGTCATGTATGCACTGTGCTTAAATGTTATTACCGGCTGTGCCTTCCCATGAGTAAGATGAAATGTAATGTCATACTatgtaaatgcattatttcctgctttaaaacaaaaaacaaacaaaaaaaaaaaaaaacttttaaagaCGAAATTCCAATATAAACAAAAGCTTTATAATagctttcaattatttttttcataaaggaATTGATAAAAATGTActcattaattttgtatttgtgcttttTAAGAGCCTAGAAAAGTATatgttgtttaaataaacatggaGCATTGAATGCTACACAACTGGAGTTCCCGTTTTgtacattaaacacaatatataaatatgtacacttGATATGTAAAtccaaaacattcaaaaacttTTAGGGGGAAGACACTGAAATATTCCTGGACTTTTCTTGACTCAAACAACCCCCGATTgtaagaagaaaaggaaaaaggctGTGAGGGGTAACTTCTCCTTCAGTCTAATGGATTTCAGTGTAACATCCAGTAACAGGGCGTGGCAGTCTATTTGATCCACACACTCAAACCCACTCACTCACCTTGAGTGTGGGCCTCCATATTCTCCTGCCGTCCGCAGATTCTAACCATCTGTCATGTGACACCGTCGCTAAAGTGGCCGGGCCTCATGCGAACCCCATGGCTCTGGTCAGACTCACCC

Function

GO: NA

KEGG:

id description
K09430 ELK3; ETS domain-containing protein Elk-3 (SRF accessory protein 2)

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012933 True 2076 mRNA 0.49 4 14262518 14280721

Neighbor

gene id symbol gene type direction distance location
AMCG00012927 phyh,LOC103369277,LOC102790656,LOC103375892 coding downstream 72431 14186362 ~ 14190087 (-)
AMCG00012924 NA coding downstream 81578 14175380 ~ 14180940 (-)
AMCG00012925 NA coding downstream 119169 14119619 ~ 14143349 (-)
AMCG00012919 nudt5 coding downstream 286823 13973467 ~ 13975695 (-)
AMCG00012917 upf2 coding downstream 322941 13909671 ~ 13939577 (-)
AMCG00012932 NA coding upstream 45344 14326065 ~ 14331802 (-)
AMCG00012938 metap2 coding upstream 144090 14424811 ~ 14433156 (-)
AMCG00012937 NA coding upstream 171694 14452415 ~ 14474581 (-)
AMCG00012944 NA coding upstream 394364 14675085 ~ 14702602 (-)
AMCG00012943 socs2,LOC107590271,LOC107732999 coding upstream 477080 14757801 ~ 14772607 (-)
G40903 NA non-coding downstream 156248 14099946 ~ 14106270 (-)
G40892 NA non-coding downstream 275806 13985178 ~ 13986712 (-)
G40860 NA non-coding downstream 302698 13958804 ~ 13959820 (-)
G40868 NA non-coding downstream 377343 13883597 ~ 13885175 (-)
G40798 NA non-coding downstream 704339 13469305 ~ 13558179 (-)
G40941 NA non-coding upstream 15853 14296574 ~ 14296776 (-)
G40966 NA non-coding upstream 58193 14338914 ~ 14339228 (-)
G40967 NA non-coding upstream 58627 14339348 ~ 14339810 (-)
G41030 NA non-coding upstream 227836 14508557 ~ 14510685 (-)
G41020 LOC107748465 non-coding upstream 247433 14528154 ~ 14529773 (-)
G40778 LOC107575789 other downstream 1147031 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 1356185 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 1990729 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 3400196 10857881 ~ 10862322 (-)
AMCG00012858 NA other downstream 3508820 10740354 ~ 10753698 (-)
AMCG00012931 snrpf other upstream 59695 14340416 ~ 14344472 (-)
AMCG00012985 NA other upstream 1438792 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 2349510 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 3599504 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 3649177 17929898 ~ 18046714 (-)

Expression


Co-expression Network