AMCG00012935


Basic Information

Item Value
gene id AMCG00012935
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14405558 ~ 14419258 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012935
ATGAGGCAACCCCTGCGAAATAAGGGACCGCCCCCTCCCGGTGACGTCACGCCAGAAGTCCTGTCTCTGACGTCACCGGAGGACGCGCAGCGGCCGAGGAGCGCTCCACGCGACAGTCCGCGCGAGCAGACAAGATGGCGGCGGCTCGAGTGCCAGCGGAGTGAGTGGCGTGCGAGAGCTTGCCTTCTTAGCGATGGAGATCTGAATCCGAACAAGATGGACAAATGTAAGCACGTGGGCCGGCTGCGGCTGGCGCAGGACCACTCCATCCTGAACCCGCAGAAGTGGCACTGCGTGGACTGCAACACCACGGAGTCGGTGTGGGCCTGCCTGGGCTGCTCCCACGTGGCCTGCGGGCGCTACATCGAGGAGCATGCCCTCAAGCACTTCCAGGAGCGCAGGCACCCGGTGGCCATGGAGGTCAACGAGCTTTACGTGTTCTGCTACCTGTGCGATGACTATGTGCTGAATGACAATGCCACGGGGGACCTGCGGCTGCTGCGCGGCACGCTCGGTGCCATTAAGAGCCAAAACTACATGGTCACCACGCGCAGCGGCCGCACGCTCCGCTCCATGGCTGCCAGCGATGACATCACGGCCGGCAGCGTGCAGGAGCTTGTGAGGGACGAGGACCGCATGTTCACTGCGCTCTGGCACCGCCGCCGGGCCCTGATCGGCCGGGTGTTTCGCGCCTGGTTCGAGCTGACGGCGGGGGGGCGGCGGCGGGCGGTGGAGGACAGGTTGAGGGAGGAGGCGGAGGCAAGGAGGAGGGAGACGCAGGAGCGGAGGGAGGAGCTGAAGCGGCGGCGGAAGGAGGAGCTAGAGTGCACCCCACCCAGGAAGAGCCACCGCCTTCTGGAGCTGAACCAGAAGAGTCGTCCATCCAGGAAATCGTTGGCACCGGCACACAGAGGTCTCGGAAGGGGTTCGGACAGGAAGCAGACGCCtgggtcctggagagccacaacaGTGCAGAACAGGAAACTGGGGAAGGCATGCCGCCAGAGGTCACAACCCCCCACCTCAGCCAACACCCCTACCTCATCTGACGAAGTGCTAAAGCTCGGGGACTCACCGATCCGACGGAGGCCCACGGTCACTCCTGGCGTGACAGGGCTGCGTAACCTGGGCAACACCTGCTACATGAACTCCATCCTGCAGGTGCTCAGCCACCTGCACATCTTCCGCGAGTGCTTCCTGCAGCTCGACCTCAACCAGGCCCTCGAGCTCCTGGCCAGTGCCGTCAACGGTAACTCGCGGCCGCCCCTCTGCAAGTTGGTCATGGCCCACGGCAAGGCAGGGCAGCCTTCCTTTCCTTTGTCAAAGAGGGGCATGTCGGCCGGTCTGAGTGGGGGTGCCTCCAGGACCAGGAACATGGAGCTGATCCAGCCCAAAGAGCCCAGCTCAAATCACATCTCCCTGTGCCACGAGCTGCACACCCTGTTCCAGGTGATGTGGTCAGGGAAGTGGGCCCTGGTGTCTCCCTTCGCCATGCTGAACTCCGTCTGGCAGCTCATCCCCGCCTTCCGGGGCTATGCCCAGCAGGATGCCCAGGAGTTCCTTTGTGAGCTGCTGGACAAAGTGCAGAGAGAACTGGAGACAACAGGCACCCTGCAGCCTGCCCAAGTGCCGGCCCCCCAGCGGAAGCTCATCAAGAAGGTCCTGAATGTCGTAAACACCATCTTCCATGGGCAGCTCCTCAGCCAGGTCACCTGCCTCGCCTGCGACAATAAGTCCAACACCATCGAGCCGTTCTGGGACCTGTCCCTGGAATTTCCCGAGAGATACCACTGCAACGGAAAGGAAACCGCGGCACAGTTCCCTTGCCTGCTGACAGAAATGTTGGCCAAATTCACTGAGACCGAAGCCTTGGAAGGAAACATCTATGCCTGTGATCAGTGTAACAGCAAACGGAGGAGATTCTCGTCAAAGCCCATCATCCTCACAGAGGCTCAGAAGCAGCTCATGATTCACAAACTGCCTCAGGTCCTGAGACTGCATCTGAAACGCTTCAGgtggtCAGGCCGCAATCACAGAGAGAAGATCGGAGTTCACGTCAGCTTCGATCAGATACTAAATATGGAGCCTTACTGTTGTAGGGACTCCACAGGGTCACTTAAGCCAGACTGCTTCGTTTATGAATTGTCAGCCGTAGTGATGCATCATGGGAAGGGATTTGGTTCAGGACACTACACTGCCTATTGCTACAACACGGAAGGAGGGTTCTGGGTCCACTGCAATGACTCCAAGTTAAACATCTGCACTGTGGATGAGGTTTGTAAGACCCAGGCCTACATCCTGTTTTATACCCAGCGTGTTTCTCAGGACAAAGGGAAGTCTCTTTAGAAGAGAGTCGACACCAGCTTCAAACTGAAACAGATCAACTTCACCACCAAGCACCATGTCCACAGGCGGTCTCTGAACGTCTAAGATtgtggactttttttttcttcttcaattgtatcttttcatataaaatactgGATATAAAAGTGTTAAAGATAAATTGTGAATTTTATGTACATgatgtttataatgttttgtatgaaatttttaaacttttttttatatacaagtCATAGAGTGTACAgtaatttttaaagcaattaataCTGCATGTGGCAAAATCTTTTACCATTGAAAGTTCAAATCTCGGTCAGTTTAATGTCTTTTGTGCTGTCAGTATCATTCGAAACATTCATTTCACAATACAAGTTGGTAACGCATACGTAGAACATTTCTAGATACTTGCCTTACAGATAAACAATCTCAGCTACTGTGAACCTCCTGAAATACAAGGAGCAGGTATGtaggttattttttaatagccCTTACTTTTagaatgtaattgtttaaaaatatatatatactgtattggCTCCGTAACAGGAGGATTTTATACAGACAAAcgtttaatttttatattcattttttacattgtaCTACAGATACAATATTCTGTCAGAAGAATATGACTGAATCCTGCAGTGCAATAGCCACAGTTGTCCGTGTGAATGTtaagttgttatttttaaaccaaagtTTTGGGTATTTATAATGTGCTATAAAATGCCTGAGAGGTAGCTAATGCAAGTGTCTGAGTGTGTCCGAGTTACCGGTTTTGTTTCTGACAGCAGTGCCATTAGTGTCACTTCCCCATGTCTTCTAATTCATGATTTATGATTGCACAATGCAAATGTCTTGAATTTGatcattttggtttgttttttgatcaAATTGTAAATTGGTTGAAGGTCATAAACTTAATTGTAAACTTTCATAATTTCATACCAGATTTCTGAAAACCTTTACTTGGCAGATTGTTTCCTAGTattaaatgttgtgttttgtccTTTGTGTTCATTAAAAGTTCCACACACATTTGCACTTTAACACCGAGACAGTATCCTCCTTTGGTTTGGCAACCTAACTTAGGCCTTAGATCGAGGCTTTGTCCTACCTGTGAATCACAAAGTACAGAGCTGTACCATGTCAGGGTTTAAtggtcagaagccactttctagtAATTTGTAAAAACGCAGTTGTGTGCAGGGGTGTAATGTGCGATTTGAGGGTAGGTCAAGGTTtagatttggtctaggcctttgTCACAgtacagcagcagcaaacagTATTCCATGGACTGCTCTTAAGTGTTAAAACAGTAGACCGTGAATTGCCCTTTAGTTTTAAGTGCAAAAAGTGAAGGTAACCTGTCCTTATTGCAGCCTCTGATACTGGGAAGTGAGAAACCATGCGTCTTAAGTACTTTACAGTGTTACACTTCTGTGATTTTATGTTTCATTTGGGGGAGAATGGATCAAACCTGTGATCCTGCCATAGCCTGAGTCAGGGAAGAGGAGCATTGTGCCCAGTTAATGCCAGCTTTAAGTGGAGTAGATTCTCCCAGACTTACAGACATCCTGCTCTGTCGTAAGTACAGACACTGCCATCTCTATTTACtctatatcaaaataaaaagctttctCTTTGGGTGATTGCACTATAGGTGCTTATACACATCAAGGAATAATGTCCATACATGCCCAGTCTGTTTGGAATTCCTGcaggaaaatacaatacagagcCGGGTATCTTCGAGTGAATCTTGTGGGGAGGGTTCAGGTTGGTTCTGCCAGTCACTCGACGAAAGGTCACAGGCACAGGCGCTTGGTTTCTTTCGTACATCTGCAGATAGCTAGGAAGAGTCGAGCGCAGCATTGCGAAGATcgtttttgtttgaaaataaatacaaatcagtgtTTAGTATATGGTGTTTTTCTGATGTAAATTTATGGAAGCAATACTATGCAAATTGTTACCTCAATTTTTAGAGAAATTTACCTCAATAAAATGagaatatttttgcattttttttgtttttacttcatgCCTCACTTGTGTtctgtgtaatgtgtgtgttctTTCTCAATGTGTTTGTTGCATTGCTCTCAGCCAATCCAAAACACTGGAtgtcttatttatgttttctgtatacTCATTATAAatctttgtacattttttttaatagattgtaAAGAGGATTGACTAAATGGTTGTGATTGCACCTAAGATTGCTgctttattgttaaaaaaaaataaaaatcccaaaGTTTCAAAATTGAAATCCTGTttgggggagagaaaaaaat

Function

GO:

id name namespace
GO:0021551 central nervous system morphogenesis biological_process
GO:0016579 protein deubiquitination biological_process
GO:0051322 anaphase biological_process
GO:0090231 regulation of spindle checkpoint biological_process
GO:0005634 nucleus cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11834 USP44_49; ubiquitin carboxyl-terminal hydrolase 44/49

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012935 True 4652 mRNA 0.48 6 14405558 14419258

Neighbor

gene id symbol gene type direction distance location
AMCG00012934 NA coding upstream 10489 14366098 ~ 14395069 (+)
AMCG00012928 NA coding upstream 64656 14332782 ~ 14340902 (+)
AMCG00012930 hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645 coding upstream 80685 14315841 ~ 14324873 (+)
AMCG00012929 lta4h coding upstream 92329 14299408 ~ 14313229 (+)
AMCG00012926 cdk17,LOC107658862,LOC107656329 coding upstream 146395 14228638 ~ 14259163 (+)
AMCG00012936 NA coding downstream 14545 14433803 ~ 14451103 (+)
AMCG00012939 LOC103459300,LOC104941780 coding downstream 59818 14479076 ~ 14510489 (+)
AMCG00012942 NA coding downstream 155335 14574593 ~ 14580228 (+)
AMCG00012941 NA coding downstream 233586 14652844 ~ 14681647 (+)
AMCG00012947 NA coding downstream 361307 14780565 ~ 14793388 (+)
G40989 NA non-coding upstream 7703 14397597 ~ 14397855 (+)
G40986 NA non-coding upstream 9659 14395576 ~ 14395899 (+)
G40963 NA non-coding upstream 61077 14340946 ~ 14344481 (+)
G40920 NA non-coding upstream 219422 14185240 ~ 14186136 (+)
G40846 NA non-coding upstream 417470 13986950 ~ 13988088 (+)
G41054 NA non-coding downstream 205994 14625252 ~ 14625850 (+)
G41058 NA non-coding downstream 209325 14628583 ~ 14630610 (+)
G41075 NA non-coding downstream 255807 14675065 ~ 14677245 (+)
G41082 NA non-coding downstream 270852 14690110 ~ 14690674 (+)
G41084 NA non-coding downstream 285702 14704960 ~ 14705185 (+)
G40629 NA other upstream 1869629 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1905156 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3863598 10540728 ~ 10541960 (+)
G40224 NA other upstream 3961111 10436907 ~ 10444447 (+)
AMCG00012820 nt5dc3,LOC102307862,LOC107753643 other upstream 5275347 9112460 ~ 9130211 (+)
G40999 metap2,LOC108428789,LOC100194705 other downstream 9055 14428313 ~ 14433201 (+)
AMCG00012940 LOC107748465 other downstream 97525 14516783 ~ 14529806 (+)
G41059 NA other downstream 213099 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 662161 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 878704 15297962 ~ 15317344 (+)

Expression


Co-expression Network