AMCG00012937


Basic Information

Item Value
gene id AMCG00012937
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14452415 ~ 14474581 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012937
ATGAATTCTCCGCTGTTCCAATACTTACAGGATCTAGGACACACGGATTTCGAGACATGTCCAACTGTGTCGCAGGAGGAAGAGCAATGCGCTGGGGAGGAGGGCCCACTCCTACAGGATATCCCCACCACACCAAGAAAAGGCCTTTTCTTGAAATTGGCTGACGCCCTCCTGAGATGGAGCCCCTTCTCACAGAGCACCAAGTCCGACAGTCCAGAGCAGCAGCTGGATGTGGGATTTCGCCAGTACTCTCTGCATACCATCCTGGGGCAGGAagtgctgctgcaggaggaTGTGGAGCTGATTGAGCTGCTGGACCCCAGCATCCTCTCCACAGGATCCTCTGAGCATGCACACAGTGGCCCCGCGCCAGACCTGCGCTCCCTCGCTGTTCCCACTGTGTGGTACTGTTCCCCCAACGCCGCTGGGCTGCCGTGGATGGCCCTGGGCCCCTGGCTCCTGGCGTTCTCGGCATTCCTGCTGCTGCGGGGCCTGAGCCTCTGGAGGACAGCCCGGCTCCAGCGCACCATGAGGCTGTGCAGCAGGCAGCTGGAGGAGCTTGCAGCCAACAGCAGGGCCGTCACCAGCCTGGTCCGCAGGGCCCTGCGCCTGGTCCAAGAGACGGAGGTCATCTCCCGAGGCTTCACCCTGGTCAGTGCTGCCTATCCTTTTAACAAAGCGGGGCCCCACCGTAGCCAGCAGCTCCTGGGCCTCCGCAGGGCCGTGTACAGGTCCCTGCGCGCAACCTTCCGAGCCTGTCGCCTGGCCACCTGCCACATGCTGAACACCTATCCCCTGAACTCGGAGATCGACAACGCAACCAACTACGTGTCCACGGTGCCGCTGAAGGAGCTGGGCCTGGGTCTGAGTGAGGAGCAGCTGTCTGACGAACGGgcccaggagctcactgatgacTACAGCCTCCCGGCACTCAAGGTCCTTTTCCAGCTGTGGGTGGGCCAGAGCTCCGAGTTCTTCCGCCGGCTCGCCCTGCTGCTGTCCCCGGGGCAGGACCAGCAGGACTGGGGCCTGATGCACCAGGCCGTCTCCGAGGTGACGGGTCCACTCCACTGCACGCTGACCAGCTGCCTGGGGGACCTGCGGCGCAGCTACGACTTCCACCGCTACTTCGAGACGCAGCAGCAGCCCCCCGCTGGCCCTGAGCGCAGCCGCAAGGTCCGGCAGGAGCACCGGGAGCTGGGAAGCCTGTACACTGCCGTGCGCAGCCTGCAGCTGCACCTCAAAGCCCTGCTCAACGAGGTGATTATTCTGGAGGACGAGCTGGAGAAGCTGATGGTGTCAGACGGCCCTGCGGAGATGACGTGCGCAGGCTGCCAGGACCTGCAGGACAAGCTTAGACTCATCCAGCCACACATGCAGGCCAGCTCCAGCTGCTGGGAGGACGCTGTGACCCACGTGGACCGGATGCTGCGCCGAGCCACCAACTGCACAGGAAAGCCAGACTCTCCCGAAGAGGTCCAGCCTCCACTGATCCCCCCGCTGCCCACACCCATCACTCACATCGAGGACAGAGACCCCGTCCCCGAGGAGCAGGAGCTGGAAGCCTACGTGGAGGATTCAGACTCGGAAGCAGAGGGCCGGGGCAGTCTGTTTGACCTCCTGTCGCCGGAGGAGCGTGAGAggcagaagaaggagagagaggagtccAGGAGGGTCCTGCAGGAGCTCAAATCAGTGCTGGGGCTCCGCGCTTCAGAGGTGGAACGGCAAAAGTGGAAACAGCTTCTGTTCAGTGACCAAGCTGTCCTGAAGCCCATAGTGCCTGTGGAGGCTGCAGGACCTGACGATACCCCAGGCGCTGGTCTGGACACGGACTCGCCTGTGCAGGACAGCAGTCAGCACAACCACCTCGCTGAAGAGctgaggggagaggaggggggcgACAGCAGGGAGAGCCCAAGCCCCGCCCCCGCAGGGACTAAGACCGAGTATTCCTGTGGGCTGCCTGCGCAGGGAGACGTACTTCAGGATCAGCCGCACGAGGGGGTGGCACCCAGTAACCCAGGCGCAACTCTACACTACCAGTACGACGGCACGGAGGGGGAAGGCCAGACTGGTGCGGAGTCTGCAGATGCCATGTCCGGTCTAGCAGAGAGAGCCCCCCCCGTCTCTGTGAAAGAGAGGCTGACAGGACTGCACGGCACGGCAGCCTTGAGCTTCAGTTCCGCATTGGCAGCACAGGTGGCGGCCAAGTCCCACTCCTTCTCCAGCATGCAGGAGCAAACCTTCggagatgaggaggaggaggaggaagaggaagaagaagaactGTCAAGGGGAGATGAGGAGGAGTAAGGACATAGAGCTGCTATATTGAAAACTGTACAgcaggatatttattttaatactttcaatgttatttattgaaatactgCTTAAAGAAGaagatacttttttttgtttgtttgtgtaatttcaTTTAGTGGTTTTGGTGTGGTCTTATGCTTTTgtcttttagtcttttttttgtttgtttgtttttaatgataagGACTGTCATTAAGACTCATCAGACTACCAAACCAGCATTGTCTCGAAACACATTTAGTTCTCACTGTACTCAACACCCTTGAATATCGGTCAGCGGGAGCCTCTGGGCATGTCGTGACCATCTCTCCACTGACATGCATGCCAGTTCCCTCCCAGACCAGTTTCCTCATTTCAAAATCTCCACACAGGCTGAccgcagacagacagacagacagatcgACATGTGAGAAGGAAGTCAGTCTTCAAGCTGTGTATCAGCAGCAGTGTGCGCACAACTGAAAGCAAATAACCGTCCAGAAAATGTTTAAGGCCCGATATCGTGGCACTATGCTGGAGATGGAAATAGATGATTGTAGGAATAAATTATTCCTCTGTGTAACATTAGACAGCGCAGCGTCCAAGCACTGTGCTCCTCTAATGCTCGCCCCCTCCCTTGCACTCATTGGGTTAAATCACAGagtattcattttccttttctaagTTTGGAGAGCCAGGGAGGACCAAGTCTCTGAAGAGGAGACCTTTCCCTTGAACTCGTTCCCCCAGTGAATTCTGCCCACGTTGTTACTGACTGGCAGTCGCTGAAGCGAGGGGCGAAAAGCAGGGGACTGCTGCGCGTTTACCAATACAGAATTCTCAGGTACAGCTCTGGGACCAGTAAACTGAATGTAACACTACAAATTTAAAAGTCGCTAAACGGGTGAATGTGCTTTGAAGACCACGTCCAGGTACTGTTGGGCTGGTGCTGAACCACTGAGTTTTCTTACAAAACAGTTAAAATCCTGAATGTTTcataacatgaaaaaaaataattagacaaaTCTGCTGATATTATTTATCAGCTGTGGATCTGATTATGCACTGATATAATGTGAATCTTAGCATCACCTATGTCTGTCCTGAGATCATGagctgcatgtgtgtgtactgtatttggTACCAACCGTGCCAACCAAGCCATTAAAGCAAGTAGGAGGAAAGCACtggcttttttctttgtgttttaaaagagaaaaactaaCCGAAAAATCTAATTTGTATGCATTGACTATAGGAATATATATGAAGTTTCCTCAGCAACACGAGTCACACAATGCAGATGCTCCATTTTGAATGTACACACGGTGTGCCCAATTGTACATTTCCACCTCTCATGTTTAGCCAGAGCAGCCACACCGCATTTGAGAAGTGGTTCAGTGACCAGGCGTCGGTGGAGTTGCTGCTTCCAGAATATGATAGTCTCACTGGGGCcaaaatgttaaattcaataataaaataaaacaagactcaaaatgattaattatcaACACTGACGCTGACCCTGTACAGTGCGTGTTCATCAGTGGGGGCATCTTTAGGTTGTCATGGCAATCAATCCCAAAGCTTGCTAAATTAATCAAACTTagtaacaaacaaatgtaaacatactTCAGAAAACTACAGGACGACAGCTCTGGGATTAGGGTTGTCCGGGCGGAGGCAGGGAGTGACATTAATCCATTCGCTAAGATAAATGCAGGTTATTATTTCAATCACAACATTAAATGCAATTCCCCAGTTTAAATATCTGCTCATAAATGAATTTATTCTAATGCCGTGATGAAAGTGCTGACCAGTCTGGGCAAGTAATCCCCACTCCCGATTTCACGGATCTAAATGTAAATTTGTTTCAACGCACTTTTCAGTTGTTCATTACAATGTAGGAGGTAATAATACTGACCCCCAGTTCACGTAATTTTCAAACCACAGCTAGAGGAAATTCTCCTTCAGCTCAAGAGAATGGAAATGGACACAGCCAGGCTTGGCACTCCAGTGCCCATGAGGTAAACGCAGCCTGCGCTACACAAAGCCACTCATTCTGTTtgagtattttaaatacacaatgttgCACTACCATGCTTATCACCTACAGTGCTGCCTCTCTTCATCTGCAGGAGGTGCAGAGATGCAGCACTGGCACTGTGCTGGACTAAGATAAAGCTTTCCTCCTGGATATTGTGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012937 True 4513 mRNA 0.53 12 14452415 14474581

Neighbor

gene id symbol gene type direction distance location
AMCG00012938 metap2 coding downstream 19259 14424811 ~ 14433156 (-)
AMCG00012932 NA coding downstream 120613 14326065 ~ 14331802 (-)
AMCG00012933 NA coding downstream 171694 14262518 ~ 14280721 (-)
AMCG00012927 phyh,LOC103369277,LOC102790656,LOC103375892 coding downstream 262328 14186362 ~ 14190087 (-)
AMCG00012924 NA coding downstream 271475 14175380 ~ 14180940 (-)
AMCG00012944 NA coding upstream 200504 14675085 ~ 14702602 (-)
AMCG00012943 socs2,LOC107590271,LOC107732999 coding upstream 283220 14757801 ~ 14772607 (-)
AMCG00012948 NA coding upstream 320461 14795042 ~ 14796838 (-)
AMCG00012955 tspan12,LOC102782178,LOC108228819 coding upstream 577382 15051963 ~ 15065613 (-)
AMCG00012956 NA coding upstream 603517 15078098 ~ 15079375 (-)
G40967 NA non-coding downstream 112605 14339348 ~ 14339810 (-)
G40966 NA non-coding downstream 113187 14338914 ~ 14339228 (-)
G40941 NA non-coding downstream 155639 14296574 ~ 14296776 (-)
G40903 NA non-coding downstream 346145 14099946 ~ 14106270 (-)
G40892 NA non-coding downstream 465703 13985178 ~ 13986712 (-)
G41030 NA non-coding upstream 33976 14508557 ~ 14510685 (-)
G41020 LOC107748465 non-coding upstream 53573 14528154 ~ 14529773 (-)
G41047 NA non-coding upstream 113264 14587845 ~ 14588126 (-)
G41088 NA non-coding upstream 242653 14717234 ~ 14717564 (-)
G41102 NA non-coding upstream 259154 14733735 ~ 14736629 (-)
AMCG00012931 snrpf other downstream 107943 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 1336928 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 1546082 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 2180626 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 3590093 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 1244932 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 2155650 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 3405644 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 3455317 17929898 ~ 18046714 (-)
G41807 NA other upstream 3701480 18176061 ~ 18191522 (-)

Expression


Co-expression Network